{ "type": "genome", "identifier": "GCF_022808695.1", "organism": "Fundidesulfovibrio soli", "title": "Fundidesulfovibrio soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022808695.1", "bioproject": "PRJNA224116", "biosample": "SAMN26330684", "wgs_master": "JAKZKW000000000.1", "refseq_category": "reference genome", "taxid": "2922716", "species_taxid": "2922716", "organism_name": "Fundidesulfovibrio soli", "infraspecific_name": "strain=SG60", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/02", "asm_name": "ASM2280869v1", "asm_submitter": "Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment", "gbrs_paired_asm": "GCA_022808695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/808/695/GCF_022808695.1_ASM2280869v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4001451", "genome_size_ungapped": "4001331", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022808695.1-RS_2024_03_14", "annotation_date": "2024-03-14", "total_gene_count": "3564", "protein_coding_gene_count": "3489", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-02", "dateModified": "2022-04-02", "datePublished": "2022-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Fundidesulfovibrio soli" ], "sample_taxid": [ "2922716" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4001451", "Number of Sequences": "42", "Longest Sequences (bp)": "821863", "N50 (bp)": "144363", "Gap Ratio (%)": "0.002999", "GCcontent (%)": "65.5", "Number of CDSs": "3543", "Average Protein Length": "332.9", "Coding Ratio (%)": "88.4", "Number of rRNAs": "4", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fundidesulfovibrio magnetotacticus", "strain": "strain=FSS-1", "accession": "GCA_013019105.1", "taxid": 2730080, 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"matched_fragments": 374, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio piger", "strain": "strain=ATCC 29098", "accession": "GCA_000156375.1", "taxid": 901, "species_taxid": 901, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4165, "matched_fragments": 172, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfonatronum lacustre", "strain": "strain=DSM 10312", "accession": "GCA_000519265.1", "taxid": 66849, "species_taxid": 66849, "relation_to_type": "type", "validated": true, "ani": 76.4989, "matched_fragments": 170, "total_fragments": 1314, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013019105.1", "gtdb_species": "s__Fundidesulfovibrio sp013019105", "ani": 82.8811, "matched_fragments": 784, "total_fragments": 1314, 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