{ "type": "genome", "identifier": "GCF_022809115.1", "organism": "Pedobacter montanisoli", "title": "Pedobacter montanisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyonggi Univ.", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022809115.1", "bioproject": "PRJNA224116", "biosample": "SAMN26376177", "wgs_master": "JALGBH000000000.1", "refseq_category": "reference genome", "taxid": "2923277", "species_taxid": "2923277", "organism_name": "Pedobacter montanisoli", "infraspecific_name": "strain=CYS-01", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/02", "asm_name": "ASM2280911v1", "asm_submitter": "Kyonggi Univ.", "gbrs_paired_asm": "GCA_022809115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/809/115/GCF_022809115.1_ASM2280911v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3290107", "genome_size_ungapped": "3290009", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022809115.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "2919", "protein_coding_gene_count": "2874", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-02", "dateModified": "2022-04-02", "datePublished": "2022-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Pedobacter montanisoli" ], "sample_taxid": [ "2923277" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.924 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3290107", "Number of Sequences": "3", "Longest Sequences (bp)": "1735116", "N50 (bp)": "1735116", "Gap Ratio (%)": "0.002979", "GCcontent (%)": "36.6", "Number of CDSs": "2858", "Average Protein Length": "347.7", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedobacter xixiisoli", "strain": "strain=S27", "accession": "GCA_005925365.1", "taxid": 1476464, "species_taxid": 1476464, "relation_to_type": "type", "validated": true, "ani": 78.0361, "matched_fragments": 243, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter xixiisoli", "strain": "strain=CGMCC 1.12803", "accession": "GCA_900215335.1", "taxid": 1476464, "species_taxid": 1476464, "relation_to_type": "type", "validated": true, "ani": 78.0167, "matched_fragments": 241, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter ureilyticus", "strain": "strain=THG-T11", "accession": "GCA_005925345.1", "taxid": 1393051, "species_taxid": 1393051, "relation_to_type": "type", "validated": true, "ani": 77.997, "matched_fragments": 244, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter namyangjuensis", "strain": "strain=5G38", "accession": "GCA_003313325.1", "taxid": 600626, "species_taxid": 600626, "relation_to_type": "type", "validated": true, "ani": 77.9694, "matched_fragments": 208, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nanyangensis", "strain": "strain=Q-4", "accession": "GCA_003313505.1", "taxid": 1562389, "species_taxid": 1562389, "relation_to_type": "type", "validated": true, "ani": 77.9394, "matched_fragments": 243, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter planticolens", "strain": "strain=LMG 31464", "accession": "GCA_014172375.1", "taxid": 2679964, "species_taxid": 2679964, "relation_to_type": "type", "validated": true, "ani": 77.8046, "matched_fragments": 237, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter cryotolerans", "strain": "strain=AR-2-6", "accession": "GCA_005116475.1", "taxid": 2571270, "species_taxid": 2571270, "relation_to_type": "type", "validated": true, "ani": 77.7532, "matched_fragments": 242, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter insulae", "strain": "strain=DSM 18684", "accession": "GCA_900113525.1", "taxid": 414048, "species_taxid": 414048, "relation_to_type": "type", "validated": true, "ani": 77.7206, "matched_fragments": 152, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter chitinilyticus", "strain": "strain=CM134L-2", "accession": "GCA_003313385.1", "taxid": 2233776, "species_taxid": 2233776, "relation_to_type": "type", "validated": true, "ani": 77.7115, "matched_fragments": 277, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter chitinilyticus", "strain": "strain=CM134L-2", "accession": "GCA_004025525.1", "taxid": 2233776, "species_taxid": 2233776, "relation_to_type": "type", "validated": true, "ani": 77.706, "matched_fragments": 276, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter agri", "strain": "strain=PB92", "accession": "GCA_000258495.1", "taxid": 454586, "species_taxid": 454586, "relation_to_type": "type", "validated": true, "ani": 77.7034, "matched_fragments": 143, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter foliorum", "strain": "strain=LMG 31463", "accession": "GCA_013266735.1", "taxid": 2739058, "species_taxid": 2739058, "relation_to_type": "type", "validated": true, "ani": 77.6054, "matched_fragments": 147, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter fastidiosus", "strain": "strain=CCM 8938", "accession": "GCA_014306625.1", "taxid": 2765361, "species_taxid": 2765361, "relation_to_type": "type", "validated": true, "ani": 77.595, "matched_fragments": 132, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter kyungheensis", "strain": "strain=KACC 16221", "accession": "GCA_000812965.1", "taxid": 1069985, "species_taxid": 1069985, "relation_to_type": "type", "validated": true, "ani": 77.3985, "matched_fragments": 182, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter frigoris", "strain": "strain=RP-3-15", "accession": "GCA_005116445.1", "taxid": 2571272, "species_taxid": 2571272, "relation_to_type": "type", "validated": true, "ani": 77.362, "matched_fragments": 130, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter polaris", "strain": "strain=RP-3-22", "accession": "GCA_005116505.1", "taxid": 2571273, "species_taxid": 2571273, "relation_to_type": "type", "validated": true, "ani": 77.3401, "matched_fragments": 238, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter caeni", "strain": "strain=DSM 16990", "accession": "GCA_900129215.1", "taxid": 288992, "species_taxid": 288992, "relation_to_type": "type", "validated": true, "ani": 77.2171, "matched_fragments": 149, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter mucosus", "strain": "strain=Q8-18", "accession": "GCA_022200785.1", "taxid": 2895286, "species_taxid": 2895286, "relation_to_type": "type", "validated": true, "ani": 77.1238, "matched_fragments": 147, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter rhizosphaerae", "strain": "strain=DSM 18610", "accession": "GCA_900111155.1", "taxid": 390241, "species_taxid": 390241, "relation_to_type": "type", "validated": true, "ani": 76.9855, "matched_fragments": 168, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter yulinensis", "strain": "strain=YL28-9", "accession": "GCA_003029735.1", "taxid": 2126353, "species_taxid": 2126353, "relation_to_type": "type", "validated": true, "ani": 76.8427, "matched_fragments": 62, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter segetis", "strain": "strain=SD-b", "accession": "GCA_016623585.1", "taxid": 2793069, "species_taxid": 2793069, "relation_to_type": "type", "validated": true, "ani": 76.3249, "matched_fragments": 70, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002336465.1", "gtdb_species": "s__Pedobacter sp002336465", "ani": 86.7227, "matched_fragments": 649, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005925325.1", "gtdb_species": "s__Pedobacter helvus", "ani": 78.2523, "matched_fragments": 250, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003313335.1", "gtdb_species": "s__Pedobacter zeaxanthinifaciens", "ani": 78.2273, "matched_fragments": 201, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900215335.1", "gtdb_species": "s__Pedobacter xixiisoli", "ani": 78.0167, "matched_fragments": 241, 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