{ "type": "genome", "identifier": "GCF_022809775.1", "organism": "Pseudodesulfovibrio tunisiensis", "title": "Pseudodesulfovibrio tunisiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Institute of Ocean Science & Technology (KIOST)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022809775.1", "bioproject": "PRJNA224116", "biosample": "SAMN26763762", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "463192", "species_taxid": "463192", "organism_name": "Pseudodesulfovibrio tunisiensis", "infraspecific_name": "strain=RB22", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/03", "asm_name": "ASM2280977v1", "asm_submitter": "Korea Institute of Ocean Science & Technology (KIOST)", "gbrs_paired_asm": "GCA_022809775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/809/775/GCF_022809775.1_ASM2280977v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3609901", "genome_size_ungapped": "3609901", "gc_percent": "59.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022809775.1-RS_2024_04_17", "annotation_date": "2024-04-17", "total_gene_count": "3406", "protein_coding_gene_count": "3285", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-03", "dateModified": "2022-04-03", "datePublished": "2022-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudodesulfovibrio tunisiensis" ], "sample_taxid": [ "463192" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tunisia: Bizerte" ], "sample_host_location_id": [], "data_size": "1.003 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3609901", "Number of Sequences": "1", "Longest Sequences (bp)": "3609901", "N50 (bp)": "3609901", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.4", "Number of CDSs": "3370", "Average Protein Length": "315.1", "Coding Ratio (%)": "88.3", "Number of rRNAs": "9", "Number of tRNAs": "63", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudodesulfovibrio tunisiensis", "strain": "strain=RB22", "accession": "GCA_022809775.1", "taxid": 463192, "species_taxid": 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"matched_fragments": 390, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio sediminis", "strain": "strain=SF6", "accession": "GCA_020886695.1", "taxid": 2810563, "species_taxid": 2810563, "relation_to_type": "type", "validated": true, "ani": 77.824, "matched_fragments": 256, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000189295.2", "gtdb_species": "s__Pseudodesulfovibrio mercurii", "ani": 78.9199, "matched_fragments": 467, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Pseudodesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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