{
    "type": "genome",
    "identifier": "GCF_022811565.1",
    "organism": "Paenibacillus polymyxa ATCC 842",
    "title": "Paenibacillus polymyxa ATCC 842",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zhejiang university of technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022811565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07972645",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1036171",
        "species_taxid": "1406",
        "organism_name": "Paenibacillus polymyxa ATCC 842",
        "infraspecific_name": "strain=ATCC 842",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/04",
        "asm_name": "ASM2281156v1",
        "asm_submitter": "Zhejiang university of technology",
        "gbrs_paired_asm": "GCA_022811565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/811/565/GCF_022811565.1_ASM2281156v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5967522",
        "genome_size_ungapped": "5967522",
        "gc_percent": "45.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022811565.1-RS_2024_04_21",
        "annotation_date": "2024-04-21",
        "total_gene_count": "5442",
        "protein_coding_gene_count": "5245",
        "non_coding_gene_count": "137",
        "pubmed_id": "34413842"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-04",
    "dateModified": "2022-04-04",
    "datePublished": "2022-04-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus polymyxa ATCC 842"
        ],
        "sample_taxid": [
            "1036171"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Zhejiang University of Technology"
        ],
        "sample_host_location_id": [],
        "data_size": "1.700 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5967522",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "5921998",
        "N50 (bp)": "5921998",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "45.1",
        "Number of CDSs": "5421",
        "Average Protein Length": "314.8",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "42",
        "Number of tRNAs": "89",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Paenibacillus polymyxa",
                "strain": "strain=ATCC 842",
                "accession": "GCA_022811565.1",
                "taxid": 1406,
                "species_taxid": 1406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1988,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus polymyxa",
                "strain": "strain=NCTC10343",
                "accession": "GCA_900454525.1",
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                "species_taxid": 1406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9973,
                "matched_fragments": 1988,
                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus polymyxa",
                "strain": "strain=DSM 36",
                "accession": "GCA_015710975.1",
                "taxid": 1406,
                "species_taxid": 1406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9964,
                "matched_fragments": 1985,
                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus polymyxa",
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                "accession": "GCA_000217775.1",
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                "species_taxid": 1406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9699,
                "matched_fragments": 1954,
                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus ottowii",
                "strain": "strain=MS2379",
                "accession": "GCA_006874425.1",
                "taxid": 2315729,
                "species_taxid": 2315729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1941,
                "matched_fragments": 1568,
                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus farraposensis",
                "strain": "strain=UY79",
                "accession": "GCA_020736845.1",
                "taxid": 2807095,
                "species_taxid": 2807095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.2501,
                "matched_fragments": 1183,
                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus algicola",
                "strain": "strain=HB172198",
                "accession": "GCA_005577435.1",
                "taxid": 2565926,
                "species_taxid": 2565926,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.201,
                "matched_fragments": 113,
                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus brevis",
                "strain": "strain=MSJ-6",
                "accession": "GCA_018919145.1",
                "taxid": 2841508,
                "species_taxid": 2841508,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1505,
                "matched_fragments": 94,
                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus piscarius",
                "strain": "strain=P121",
                "accession": "GCA_022234545.1",
                "taxid": 1089681,
                "species_taxid": 1089681,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6107,
                "matched_fragments": 109,
                "total_fragments": 1988,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_015710975.1",
                "gtdb_species": "s__Paenibacillus polymyxa",
                "ani": 99.9964,
                "matched_fragments": 1985,
                "total_fragments": 1988,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.54",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 44,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000237325.1",
                "gtdb_species": "s__Paenibacillus polymyxa_C",
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                "matched_fragments": 1705,
                "total_fragments": 1988,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.50",
                "min_intra_species_ani": "97.87",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 15,
                "status": "-"
            },
            {
                "accession": "GCF_006874425.1",
                "gtdb_species": "s__Paenibacillus ottowii",
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                "total_fragments": 1988,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
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                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001709075.1",
                "gtdb_species": "s__Paenibacillus polymyxa_D",
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                "matched_fragments": 1556,
                "total_fragments": 1988,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "97.93",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_001719045.1",
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                "matched_fragments": 1604,
                "total_fragments": 1988,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.14",
                "min_intra_species_ani": "95.58",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 27,
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            },
            {
                "accession": "GCF_002240415.1",
                "gtdb_species": "s__Paenibacillus kribbensis",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_009363115.1",
                "gtdb_species": "s__Paenibacillus brasilensis",
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                "total_fragments": 1988,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000236805.1",
                "gtdb_species": "s__Paenibacillus peoriae",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.301,
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        "coding_genes": 5845.778,
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        "sporulation": 1.0,
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        "range_salinity": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Paenibacillus",
        "polymyxa",
        "ATCC",
        "842"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}