{ "type": "genome", "identifier": "GCF_022811665.1", "organism": "Chryseobacterium oryzae", "title": "Chryseobacterium oryzae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022811665.1", "bioproject": "PRJNA224116", "biosample": "SAMN27016921", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2929799", "species_taxid": "2929799", "organism_name": "Chryseobacterium oryzae", "infraspecific_name": "strain=ADR-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/04", "asm_name": "ASM2281166v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_022811665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/811/665/GCF_022811665.1_ASM2281166v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3238712", "genome_size_ungapped": "3238712", "gc_percent": "34.000000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022811665.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "2946", "protein_coding_gene_count": "2864", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-04", "dateModified": "2022-04-04", "datePublished": "2022-04-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium oryzae" ], "sample_taxid": [ "2929799" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeongsangbuk-do, Andong-si" ], "sample_host_location_id": [], "data_size": "0.897 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3238712", "Number of Sequences": "3", "Longest Sequences (bp)": "3131263", "N50 (bp)": "3131263", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.0", "Number of CDSs": "2873", "Average Protein Length": "329.6", "Coding Ratio (%)": "87.7", "Number of rRNAs": "15", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium echinoideorum", "strain": "strain=CC-CZW010", "accession": "GCA_007474535.1", "taxid": 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"status": "below_threshold" }, { "organism_name": "Chryseobacterium populi", "strain": "strain=CF314", "accession": "GCA_000282115.1", "taxid": 1144316, "species_taxid": 1144316, "relation_to_type": "type", "validated": true, "ani": 78.8146, "matched_fragments": 440, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017808115.1", "gtdb_species": "s__Chryseobacterium sp017808115", "ani": 97.0323, "matched_fragments": 813, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_007474535.1", "gtdb_species": 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