{ "type": "genome", "identifier": "GCF_022832435.1", "organism": "Novosphingobium organovorum", "title": "Novosphingobium organovorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi Academy of Science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022832435.1", "bioproject": "PRJNA224116", "biosample": "SAMN27028222", "wgs_master": "JALHLF000000000.1", "refseq_category": "reference genome", "taxid": "2930092", "species_taxid": "2930092", "organism_name": "Novosphingobium organovorum", "infraspecific_name": "strain=B1949", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/06", "asm_name": "ASM2283243v1", "asm_submitter": "Guangxi Academy of Science", "gbrs_paired_asm": "GCA_022832435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/832/435/GCF_022832435.1_ASM2283243v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4604542", "genome_size_ungapped": "4603859", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "284", "contig_count": "284", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022832435.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4261", "protein_coding_gene_count": "4038", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-06", "dateModified": "2022-04-06", "datePublished": "2022-04-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Novosphingobium organovorum" ], "sample_taxid": [ "2930092" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.270 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4604542", "Number of Sequences": "284", "Longest Sequences (bp)": "173861", "N50 (bp)": "39859", "Gap Ratio (%)": "0.017504", "GCcontent (%)": "66.4", "Number of CDSs": "3909", "Average Protein Length": "324.1", "Coding Ratio (%)": "82.6", "Number of rRNAs": "3", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Novosphingobium profundi", "strain": "strain=F72", "accession": "GCA_018491765.1", "taxid": 1774954, "species_taxid": 1774954, "relation_to_type": "type", "validated": true, "ani": 83.9642, "matched_fragments": 923, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium decolorationis", "strain": "strain=502str22", "accession": "GCA_018417475.1", "taxid": 2698673, "species_taxid": 2698673, "relation_to_type": "type", "validated": true, "ani": 83.6257, "matched_fragments": 848, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aureum", "strain": "strain=YJ-S2-02", "accession": "GCA_015865035.1", "taxid": 2792964, "species_taxid": 2792964, "relation_to_type": "type", "validated": true, "ani": 82.4747, "matched_fragments": 750, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium naphthalenivorans", "strain": "strain=NBRC 102051", "accession": "GCA_001590985.1", "taxid": 273168, "species_taxid": 273168, "relation_to_type": "type", "validated": true, "ani": 81.272, "matched_fragments": 648, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000235975.2", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", "validated": true, "ani": 80.8381, "matched_fragments": 549, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium pentaromativorans", "strain": "strain=US6-1", "accession": "GCA_000767465.1", "taxid": 205844, "species_taxid": 205844, "relation_to_type": "type", "validated": true, "ani": 80.7174, "matched_fragments": 571, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium mathurense", "strain": "strain=SM117", "accession": "GCA_900168325.1", "taxid": 428990, "species_taxid": 428990, "relation_to_type": "type", "validated": true, "ani": 80.5115, "matched_fragments": 603, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium indicum", "strain": "strain=CGMCC 1.6784", "accession": "GCA_014645195.1", "taxid": 462949, "species_taxid": 462949, "relation_to_type": "type", "validated": true, "ani": 80.3997, "matched_fragments": 605, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium malaysiense", "strain": "strain=MUSC 273", "accession": "GCA_000802225.1", "taxid": 1348853, "species_taxid": 1348853, "relation_to_type": "type", "validated": true, "ani": 80.3793, "matched_fragments": 566, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium guangzhouense", "strain": "strain=SA925", "accession": "GCA_002896965.1", "taxid": 1850347, "species_taxid": 1850347, "relation_to_type": "type", "validated": true, "ani": 80.114, "matched_fragments": 587, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium silvae", "strain": "strain=FGD1", "accession": "GCA_009856825.1", "taxid": 2692619, "species_taxid": 2692619, "relation_to_type": "type", "validated": true, "ani": 79.8355, "matched_fragments": 561, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium huizhouense", "strain": "strain=c7", "accession": "GCA_020179475.1", "taxid": 2866625, "species_taxid": 2866625, "relation_to_type": "type", "validated": true, "ani": 79.678, "matched_fragments": 509, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium aquimarinum", "strain": "strain=M24A2M", "accession": "GCA_009746585.1", "taxid": 2682494, "species_taxid": 2682494, "relation_to_type": "type", "validated": true, "ani": 79.6444, "matched_fragments": 483, "total_fragments": 1401, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Novosphingobium", "organovorum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }