{
    "type": "genome",
    "identifier": "GCF_022836475.1",
    "organism": "Ligilactobacillus pabuli",
    "title": "Ligilactobacillus pabuli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center of Genetic Resources, NARO",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022836475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00446889",
        "wgs_master": "BQXH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2886039",
        "species_taxid": "2886039",
        "organism_name": "Ligilactobacillus pabuli",
        "infraspecific_name": "strain=AF129",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/15",
        "asm_name": "ASM2283647v1",
        "asm_submitter": "Research Center of Genetic Resources, NARO",
        "gbrs_paired_asm": "GCA_022836475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/836/475/GCF_022836475.1_ASM2283647v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2348930",
        "genome_size_ungapped": "2347860",
        "gc_percent": "41.500000",
        "replicon_count": "0",
        "scaffold_count": "81",
        "contig_count": "81",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022836475.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "2251",
        "protein_coding_gene_count": "2111",
        "non_coding_gene_count": "96",
        "pubmed_id": "36269574"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-15",
    "dateModified": "2022-03-15",
    "datePublished": "2022-03-15",
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        "sample_count": 1,
        "sample_organism": [
            "Ligilactobacillus pabuli"
        ],
        "sample_taxid": [
            "2886039"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Iwate, Morioka"
        ],
        "sample_host_location_id": [],
        "data_size": "0.669 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
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        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2348930",
        "Number of Sequences": "81",
        "Longest Sequences (bp)": "216219",
        "N50 (bp)": "102232",
        "Gap Ratio (%)": "0.045553",
        "GCcontent (%)": "41.5",
        "Number of CDSs": "2160",
        "Average Protein Length": "297.6",
        "Coding Ratio (%)": "82.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "3"
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    "has_analysis": true,
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}