{ "type": "genome", "identifier": "GCF_022836845.1", "organism": "Vibrio gelatinilyticus", "title": "Vibrio gelatinilyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022836845.1", "bioproject": "PRJNA224116", "biosample": "SAMN22999944", "wgs_master": "JAJNNZ000000000.1", "refseq_category": "reference genome", "taxid": "2893468", "species_taxid": "2893468", "organism_name": "Vibrio gelatinilyticus", "infraspecific_name": "strain=ZSDZ34", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/08", "asm_name": "ASM2283684v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_022836845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/836/845/GCF_022836845.1_ASM2283684v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4299233", "genome_size_ungapped": "4299233", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "68", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022836845.1-RS_2024_04_20", "annotation_date": "2024-04-20", "total_gene_count": "3940", "protein_coding_gene_count": "3796", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-08", "dateModified": "2022-04-08", "datePublished": "2022-04-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio gelatinilyticus" ], "sample_taxid": [ "2893468" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qingdao" 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"strain": "strain=CAIM 1454", "accession": "GCA_003263785.1", "taxid": 990271, "species_taxid": 990271, "relation_to_type": "type", "validated": true, "ani": 79.918, "matched_fragments": 414, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pelagius", "strain": "strain=ATCC 25916", "accession": "GCA_024347575.1", "taxid": 28169, "species_taxid": 28169, "relation_to_type": "type", "validated": true, "ani": 79.8965, "matched_fragments": 275, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8622, "matched_fragments": 272, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio barjaei", "strain": "strain=3062", "accession": "GCA_001639065.2", "taxid": 1676683, "species_taxid": 1676683, "relation_to_type": "type", "validated": true, "ani": 79.8539, "matched_fragments": 408, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=CCUG 48643", "accession": "GCA_008801295.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.8216, "matched_fragments": 266, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LGP 13", "accession": "GCA_002156475.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 79.8197, "matched_fragments": 276, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=Corallo1", "accession": "GCA_002156455.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", 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"total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio harveyi", "strain": "strain=NBRC 15634", "accession": "GCA_001591145.1", "taxid": 669, "species_taxid": 669, "relation_to_type": "type", "validated": true, "ani": 79.6594, "matched_fragments": 259, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio atlanticus", "strain": "strain=CECT 7223", "accession": "GCA_024347315.1", "taxid": 693153, "species_taxid": 693153, "relation_to_type": "type", "validated": true, "ani": 79.606, "matched_fragments": 279, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio kanaloae", "strain": "strain=CCUG 56968", "accession": "GCA_008801285.1", "taxid": 170673, "species_taxid": 170673, "relation_to_type": "type", "validated": true, "ani": 79.6058, "matched_fragments": 265, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=DSM 27495", "accession": "GCA_024347375.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 79.5728, "matched_fragments": 288, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio echinoideorum", "strain": "strain=DSM 107264", "accession": "GCA_024347455.1", "taxid": 2100116, "species_taxid": 2100116, "relation_to_type": "type", "validated": true, "ani": 79.5591, "matched_fragments": 274, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio kanaloae", "strain": "strain=LMG 20539", "accession": "GCA_024347535.1", "taxid": 170673, "species_taxid": 170673, "relation_to_type": "type", "validated": true, "ani": 79.5343, "matched_fragments": 270, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 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71388, "relation_to_type": "type", "validated": true, "ani": 79.298, "matched_fragments": 171, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio rhodolitus", "strain": "strain=G98", "accession": "GCA_003350325.1", "taxid": 2231649, "species_taxid": 2231649, "relation_to_type": "type", "validated": true, "ani": 79.2952, "matched_fragments": 259, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ezurae", "strain": "strain=NBRC 102218", "accession": "GCA_000467185.1", "taxid": 252583, "species_taxid": 252583, "relation_to_type": "type", "validated": true, "ani": 79.2795, "matched_fragments": 170, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio neonatus", "strain": "strain=JCM 21521", "accession": "GCA_024346975.1", "taxid": 278860, "species_taxid": 278860, "relation_to_type": "type", "validated": true, "ani": 79.2322, "matched_fragments": 184, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ponticus", "strain": "strain=DSM 16217", "accession": "GCA_009938225.1", "taxid": 265668, "species_taxid": 265668, "relation_to_type": "type", "validated": true, "ani": 79.1682, "matched_fragments": 266, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 79.1617, "matched_fragments": 255, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 79.0832, "matched_fragments": 249, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio proteolyticus", "strain": "strain=NBRC 13287", "accession": "GCA_000467125.1", "taxid": 671, "species_taxid": 671, "relation_to_type": "type", "validated": true, "ani": 78.6457, "matched_fragments": 224, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gangliei", "strain": "strain=SZDIS-1", "accession": "GCA_002934045.1", "taxid": 2077090, "species_taxid": 2077090, "relation_to_type": "type", "validated": true, "ani": 78.634, "matched_fragments": 172, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio hibernica", "strain": "strain=B1.19", "accession": "GCA_015223435.1", "taxid": 2587465, "species_taxid": 2587465, "relation_to_type": "type", "validated": true, "ani": 78.0824, "matched_fragments": 143, "total_fragments": 1408, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000755425.1", "gtdb_species": "s__Vibrio maritimus_A", "ani": 80.1425, "matched_fragments": 398, "total_fragments": 1408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001635455.1", "gtdb_species": "s__Vibrio sp001635455", "ani": 80.0721, "matched_fragments": 252, "total_fragments": 1408, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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