{ "type": "genome", "identifier": "GCF_022846615.1", "organism": "Roseomonas fluvialis", "title": "Roseomonas fluvialis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Biological Sciences, Tokyo Metropolitan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022846615.1", "bioproject": "PRJNA224116", "biosample": "SAMD00446210", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1750527", "species_taxid": "1750527", "organism_name": "Roseomonas fluvialis", "infraspecific_name": "strain=S08", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/11", "asm_name": "ASM2284661v1", "asm_submitter": "Biological Sciences, Tokyo Metropolitan University", "gbrs_paired_asm": "GCA_022846615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/846/615/GCF_022846615.1_ASM2284661v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5481269", "genome_size_ungapped": "5481269", "gc_percent": "70.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022846615.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "5254", "protein_coding_gene_count": "5178", "non_coding_gene_count": "60", "pubmed_id": "27453124" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-11", "dateModified": "2022-03-11", "datePublished": "2022-03-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseomonas fluvialis" ], "sample_taxid": [ "1750527" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Tokyo, Ome, Tama river" ], "sample_host_location_id": [], "data_size": "1.465 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5481269", "Number of Sequences": "1", "Longest Sequences (bp)": "5481269", "N50 (bp)": "5481269", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "5267", "Average Protein Length": "316.4", "Coding Ratio (%)": "91.2", "Number of rRNAs": "6", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseomonas rubea", "strain": "strain=MO17", "accession": "GCA_016106015.1", "taxid": 2748666, "species_taxid": 2748666, "relation_to_type": "type", "validated": true, "ani": 83.5816, "matched_fragments": 982, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas oryzicola", "strain": "strain=KCTC 22478", "accession": "GCA_012163135.1", "taxid": 535904, "species_taxid": 535904, "relation_to_type": "type", "validated": true, "ani": 83.4223, "matched_fragments": 1216, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas alkaliterrae", "strain": "strain=DSM 25895", "accession": "GCA_014199195.1", "taxid": 1452450, "species_taxid": 1452450, "relation_to_type": "type", "validated": true, "ani": 83.1108, "matched_fragments": 1097, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas lacus", "strain": "strain=CGMCC 1.3617", "accession": "GCA_014644535.1", "taxid": 287609, "species_taxid": 287609, "relation_to_type": "type", "validated": true, "ani": 82.1855, "matched_fragments": 1236, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas arctica", "strain": "strain=LMG 28251", "accession": "GCA_018128965.1", "taxid": 1509237, "species_taxid": 1509237, "relation_to_type": "type", "validated": true, "ani": 78.8894, "matched_fragments": 730, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas hellenica", "strain": "strain=LMG 31523", "accession": "GCA_018129085.1", "taxid": 2687306, "species_taxid": 2687306, "relation_to_type": "type", "validated": true, "ani": 78.8009, "matched_fragments": 862, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rhizosphaerae", "strain": "strain=YW11", "accession": "GCA_002631185.1", "taxid": 1335062, "species_taxid": 1335062, "relation_to_type": "type", "validated": true, "ani": 78.6881, "matched_fragments": 678, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=CGMCC 1.15936", "accession": "GCA_014644195.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 78.5224, "matched_fragments": 750, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Siccirubricoccus deserti", "strain": "strain=SYSU D8009", "accession": "GCA_014283215.1", "taxid": 2013562, "species_taxid": 2013562, "relation_to_type": "type", "validated": true, "ani": 78.5052, "matched_fragments": 757, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius crocodyli", "strain": "strain=CCP-6", "accession": "GCA_004005855.1", "taxid": 1979269, "species_taxid": 1979269, "relation_to_type": "type", "validated": true, "ani": 78.4223, "matched_fragments": 634, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovarius lipocyclicus", "strain": "strain=CCUG 44693", "accession": "GCA_009900765.1", "taxid": 268410, "species_taxid": 268410, "relation_to_type": "type", "validated": true, "ani": 78.3454, "matched_fragments": 680, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseococcus pinisoli", "strain": "strain=XZZS9", "accession": "GCA_018413645.1", "taxid": 2835040, "species_taxid": 2835040, "relation_to_type": "type", "validated": true, "ani": 78.3428, "matched_fragments": 660, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belnapia mucosa", "strain": "strain=T6", "accession": "GCA_016775475.1", "taxid": 2804532, "species_taxid": 2804532, "relation_to_type": "type", "validated": true, "ani": 78.3021, "matched_fragments": 760, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas gilardii subsp. rosea", "strain": "strain=NCTC13290", "accession": "GCA_900455865.1", "taxid": 243956, "species_taxid": 257708, "relation_to_type": "type", "validated": true, "ani": 78.1695, "matched_fragments": 568, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas deserti", "strain": "strain=M3", "accession": "GCA_001982615.1", "taxid": 1817963, "species_taxid": 1817963, "relation_to_type": "type", "validated": true, "ani": 78.1402, "matched_fragments": 689, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas haemaphysalidis", "strain": "strain=546", "accession": "GCA_017355405.1", "taxid": 2768162, "species_taxid": 2768162, "relation_to_type": "type", "validated": true, "ani": 78.1291, "matched_fragments": 613, "total_fragments": 1827, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, 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