{
    "type": "genome",
    "identifier": "GCF_022869165.1",
    "organism": "Sphaerochaeta associata",
    "title": "Sphaerochaeta associata",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "VKM/UNIQEM/IEGM",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022869165.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN27176868",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1129264",
        "species_taxid": "1129264",
        "organism_name": "Sphaerochaeta associata",
        "infraspecific_name": "strain=GLS2T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/10",
        "asm_name": "ASM2286916v1",
        "asm_submitter": "VKM/UNIQEM/IEGM",
        "gbrs_paired_asm": "GCA_022869165.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/869/165/GCF_022869165.1_ASM2286916v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3554903",
        "genome_size_ungapped": "3554903",
        "gc_percent": "51.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022869165.1-RS_2024_04_26",
        "annotation_date": "2024-04-26",
        "total_gene_count": "3310",
        "protein_coding_gene_count": "3238",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-10",
    "dateModified": "2022-04-10",
    "datePublished": "2022-04-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sphaerochaeta associata"
        ],
        "sample_taxid": [
            "1129264"
        ],
        "sample_host_organism": [
            "Methanosarcina mazei strain VKM B-2370"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Moscow region"
        ],
        "sample_host_location_id": [],
        "data_size": "1.010 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3554903",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3554903",
        "N50 (bp)": "3554903",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.8",
        "Number of CDSs": "3278",
        "Average Protein Length": "331.5",
        "Coding Ratio (%)": "91.7",
        "Number of rRNAs": "9",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Sphaerochaeta associata",
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                "accession": "GCA_022869165.1",
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                "species_taxid": 1129264,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1184,
                "total_fragments": 1184,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sphaerochaeta globosa",
                "strain": "strain=Buddy",
                "accession": "GCA_000190435.1",
                "taxid": 1131703,
                "species_taxid": 1131703,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1796,
                "matched_fragments": 738,
                "total_fragments": 1184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerochaeta pleomorpha",
                "strain": "strain=Grapes",
                "accession": "GCA_000236685.1",
                "taxid": 1131707,
                "species_taxid": 1131707,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9564,
                "matched_fragments": 142,
                "total_fragments": 1184,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerochaeta halotolerans",
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                "accession": "GCA_003429665.1",
                "taxid": 2293840,
                "species_taxid": 2293840,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2716,
                "matched_fragments": 214,
                "total_fragments": 1184,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_012511235.1",
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                "total_fragments": 1184,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_012514185.1",
                "gtdb_species": "s__Sphaerochaeta sp012514185",
                "ani": 84.6499,
                "matched_fragments": 624,
                "total_fragments": 1184,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002432715.1",
                "gtdb_species": "s__Sphaerochaeta sp002432715",
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                "matched_fragments": 763,
                "total_fragments": 1184,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.32",
                "min_intra_species_ani": "97.53",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000190435.1",
                "gtdb_species": "s__Sphaerochaeta globosa",
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                "matched_fragments": 738,
                "total_fragments": 1184,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012519125.1",
                "gtdb_species": "s__Sphaerochaeta sp012519125",
                "ani": 79.3934,
                "matched_fragments": 268,
                "total_fragments": 1184,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001603115.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009930195.1",
                "gtdb_species": "s__Sphaerochaeta sp009930195",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
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                "mean_intra_species_ani": "99.24",
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                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_016406725.1",
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                "matched_fragments": 219,
                "total_fragments": 1184,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_003247345.1",
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            },
            {
                "accession": "GCF_003429665.1",
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            {
                "accession": "GCA_018399495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_016342655.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Sphaerochaetales;f__Sphaerochaetaceae;g__Sphaerochaeta",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 1.33,
        "growth_tmp": 30.0,
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        "genome_size": 3550837.0,
        "gc_content": 50.58,
        "coding_genes": 1829.333,
        "rRNA16S_genes": 3.0,
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        "gram_stain": 0.0,
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        "range_salinity": null,
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        "bacillus_cell_shape": 0.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "associata"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}