# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_22	LOCUS_00210	sequence1:24748..24963(+)	partial			WP_001788574.1	NINE protein	100.0	74.0	97.2
MGA_44	LOCUS_00430	sequence1:49218..50075(+)	partial			WP_001795545.1	MFS transporter	100.0	70.9	97.9
MGA_189	LOCUS_01880	sequence1:186155..186925(-)	partial			WP_000190248.1	DnaD domain protein	38.3	39.1	43.9
MGA_202	LOCUS_02010	sequence1:191501..192268(-)	partial			WP_001148557.1	phage antirepressor KilAC domain-containing protein	73.3	72.2	88.2
MGA_244	LOCUS_02430	sequence1:223851..223970(-)	frameshift		223856	WP_000791702.1	von Willebrand factor binding protein Vwb	94.9	7.4	97.3
MGA_245	LOCUS_02440	sequence1:224191..226920(-)	partial			WP_001056195.1	MSCRAMM family adhesin clumping factor ClfA	61.5	56.5	82.6
MGA_277	LOCUS_02760	sequence1:262570..262800(-)	internal_stop_codon	262888..262890(-)		WP_000538141.1	HD domain-containing protein	100.0	35.2	98.7
MGA_278	LOCUS_02770	sequence1:262888..263220(-)	internal_stop_codon	262888..262890(-)		WP_000538141.1	HD domain-containing protein	100.0	50.9	97.3
MGA_342	LOCUS_03410	sequence1:333027..333311(+)	partial			WP_001801730.1	hypothetical protein	90.4	73.9	100.0
MGA_433	LOCUS_04320	sequence1:424110..424355(-)	partial			WP_000020814.1	T7SS effector LXG polymorphic toxin	66.7	11.6	57.4
MGA_447	LOCUS_04460	sequence1:435745..436086(-)	partial			WP_000798967.1	DUF1450 domain-containing protein	69.0	69.0	100.0
MGA_478	LOCUS_04770	sequence1:471961..474948(-)	partial			WP_001060462.1	MSCRAMM family adhesin SdrC	72.1	75.2	94.7
MGA_607	LOCUS_05990	sequence1:626267..626485(-)	frameshift		626609,626326	WP_001557596.1	tandem-type lipoprotein	98.6	26.2	78.9
MGA_608	LOCUS_06000	sequence1:626601..627074(-)	frameshift		626609,626326	WP_001557596.1	tandem-type lipoprotein	88.5	51.9	83.5
MGA_620	LOCUS_06120	sequence1:639377..640072(-)	partial			WP_000705657.1	superantigen-like protein SSL4	92.2	72.6	42.3
MGA_653	LOCUS_06450	sequence1:670659..670817(+)	frameshift		670630,670903,670537,670795,670990	WP_047210621.1	site-specific integrase	88.5	11.3	84.8
MGA_654	LOCUS_06460	sequence1:670895..671206(+)	frameshift		670797,670629,670902,670998	WP_047210621.1	site-specific integrase	75.7	19.2	66.7
MGA_731	LOCUS_07230	sequence1:745146..745445(-)	frameshift		745497	WP_000141941.1	TIGR01741 family protein	100.0	59.6	81.8
MGA_732	LOCUS_07240	sequence1:745489..745641(-)	frameshift		745497	WP_000141941.1	TIGR01741 family protein	96.0	28.9	87.5
MGA_760	LOCUS_07520	sequence1:773930..774157(-)	partial			WP_126475239.1	IS1182 family transposase	85.3	11.7	98.4
MGA_827	LOCUS_08190	sequence1:855283..856242(-)	partial			WP_001796914.1	ABC transporter permease	100.0	64.8	91.5
MGA_878	LOCUS_08700	sequence1:922624..922845(-)	frameshift,internal_stop_codon	923058..923060(-)	922853	WP_000093392.1	IS200/IS605 family transposase	87.7	39.8	98.4
MGA_880	LOCUS_08720	sequence1:923869..924159(-)	frameshift		924215	WP_011117535.1	replication initiation factor domain-containing protein	99.0	31.0	63.2
MGA_881	LOCUS_08730	sequence1:924144..924689(-)	frameshift		924215	WP_011117535.1	replication initiation factor domain-containing protein	88.4	54.2	74.1
MGA_882	LOCUS_08740	sequence1:925002..925196(-)	partial			WP_000469833.1	XRE family transcriptional regulator	100.0	16.4	98.4
MGA_903	LOCUS_08950	sequence1:946468..946809(-)	partial			WP_000414629.1	MFS transporter	100.0	54.3	98.2
MGA_922	LOCUS_09140	sequence1:968130..969245(-)	internal_stop_codon	969273..969275(-)		WP_003244019.1	PLP-dependent aminotransferase family protein	100.0	77.0	37.2
MGA_923	LOCUS_09150	sequence1:969273..969527(-)	partial			WP_000577184.1	GntR family transcriptional regulator	94.0	34.9	40.7
MGA_949	LOCUS_09410	sequence1:1000887..1001339(+)	partial			WP_001827266.1	tRNA-dihydrouridine synthase	100.0	48.4	96.0
MGA_975	LOCUS_09670	sequence1:1038098..1038235(+)	partial			WP_000240855.1	50S ribosomal protein L34	60.0	60.0	100.0
MGA_987	LOCUS_09790	sequence1:1046811..1047161(-)	partial			WP_002305939.1	IS30 family transposase	89.7	32.6	70.2
MGA_989	LOCUS_09810	sequence1:1047797..1048207(-)	frameshift		1047826	WP_002305939.1	IS30 family transposase	97.1	41.4	67.4
MGA_1019	LOCUS_10110	sequence1:1075686..1076444(+)	frameshift		1076429	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	98.4	53.7	100.0
MGA_1020	LOCUS_10120	sequence1:1076441..1077073(+)	frameshift		1076426	WP_000592610.1	imidazole glycerol phosphate synthase subunit HisF	100.0	45.5	100.0
MGA_1021	LOCUS_10130	sequence1:1077233..1077445(+)	partial			WP_000837587.1	hypothetical protein	64.3	76.3	95.6
MGA_1039	LOCUS_10310	sequence1:1094797..1095321(-)	internal_stop_codon	1094797..1094799(-),1095331..1095333(-)		WP_002485492.1	hypothetical protein	98.3	42.4	39.6
MGA_1040	LOCUS_10320	sequence1:1095331..1095609(-)	internal_stop_codon	1095613..1095615(-),1095787..1095789(-),1095697..1095699(-),1095331..1095333(-)		WP_002485492.1	hypothetical protein	95.7	19.6	41.7
MGA_1041	LOCUS_10330	sequence1:1095787..1096587(-)	internal_stop_codon	1096867..1096869(-),1096597..1096599(-),1095787..1095789(-),1095613..1095615(-),1096789..1096791(-),1096687..1096689(-),1095697..1095699(-)		WP_002485492.1	hypothetical protein	99.2	50.8	40.7
MGA_1042	LOCUS_10340	sequence1:1096867..1098075(-)	internal_stop_codon	1098199..1098201(-),1096867..1096869(-),1096789..1096791(-),1096687..1096689(-)		WP_002485492.1	hypothetical protein	99.0	73.8	38.0
MGA_1043	LOCUS_10350	sequence1:1098199..1098963(-)	internal_stop_codon	1098199..1098201(-),1099114..1099116(-),1099051..1099053(-),1099057..1099059(-)		WP_002485492.1	hypothetical protein	63.0	29.8	34.1
MGA_1044	LOCUS_10360	sequence1:1098944..1099315(+)	partial			WP_000044547.1	serine-rich repeat glycoprotein adhesin SasA	55.3	3.0	92.6
MGA_1068	LOCUS_10600	sequence1:1133643..1136276(+)	partial			WP_000745891.1	MSCRAMM family adhesin clumping factor ClfB	62.9	62.9	97.6
MGA_1085	LOCUS_10770	sequence1:1156169..1156855(+)	partial			WP_003894962.1	MBL fold metallo-hydrolase	61.4	67.3	30.8
MGA_1125	LOCUS_11170	sequence1:1194520..1194840(-)	partial			WP_001795157.1	hypothetical protein	100.0	63.9	99.1
MGA_1187	LOCUS_11790	sequence1:1261591..1262055(+)	partial			WP_011948695.1	MarR family transcriptional regulator	85.1	73.0	38.2
MGA_1206	LOCUS_11980	sequence1:1290086..1290256(+)	partial			WP_001795286.1	hypothetical protein	100.0	72.7	92.9
MGA_1214	LOCUS_12060	sequence1:1298519..1299631(+)	frameshift		1299550	WP_001044255.1	membrane protein	93.0	78.0	87.5
MGA_1215	LOCUS_12070	sequence1:1299562..1299843(+)	frameshift		1299547	WP_001044255.1	membrane protein	100.0	21.1	96.8
MGA_1312	LOCUS_13040	sequence1:1400553..1400759(-)	internal_stop_codon	1400829..1400831(-)		WP_000276759.1	DUF2268 domain-containing protein	100.0	22.4	100.0
MGA_1313	LOCUS_13050	sequence1:1400829..1401467(-)	internal_stop_codon	1400829..1400831(-)		WP_000276759.1	DUF2268 domain-containing protein	100.0	69.7	99.1
MGA_1342	LOCUS_13340	sequence1:1432481..1432837(-)	partial			WP_126475239.1	IS1182 family transposase	87.3	18.9	94.2
MGA_1389	LOCUS_13810	sequence1:1479442..1479756(-)	frameshift		1479558	WP_126475239.1	IS1182 family transposase	81.7	14.7	72.9
MGA_1484	LOCUS_14750	sequence1:1559565..1560662(+)	frameshift		1560659,1559461,1559335	WP_011202675.1	DEAD/DEAH box helicase family protein	100.0	24.7	33.1
MGA_1485	LOCUS_14760	sequence1:1560659..1560952(+)	frameshift		1560659	WP_010939452.1	DEAD/DEAH box helicase family protein	96.9	6.1	47.4
MGA_1487	LOCUS_14780	sequence1:1561757..1562893(+)	partial			WP_003549016.1	ATP-dependent Clp protease ATP-binding subunit	88.6	46.2	23.4
MGA_1516	LOCUS_15070	sequence1:1592285..1592629(-)	internal_stop_codon	1592792..1592794(-)		WP_126475239.1	IS1182 family transposase	99.1	20.7	99.1
MGA_1517	LOCUS_15080	sequence1:1592792..1593091(-)	frameshift,internal_stop_codon	1592791..1592793(-)	1593240	WP_126475239.1	IS1182 family transposase	100.0	18.2	100.0
MGA_1518	LOCUS_15090	sequence1:1593109..1593909(-)	frameshift		1593240	WP_126475239.1	IS1182 family transposase	95.1	47.7	80.0
MGA_1551	LOCUS_15400	sequence1:1645587..1645790(+)	frameshift,internal_stop_codon	1645788..1645790(+)	1645609	WP_010925589.1	recombinase family protein	86.6	53.6	73.3
MGA_1589	LOCUS_15780	sequence1:1684145..1684498(+)	partial			WP_001801792.1	ATP synthase subunit I	83.8	65.3	98.0
MGA_1669	LOCUS_16560	sequence1:1769534..1770793(+)	partial			WP_000120296.1	SdrH family protein	53.9	54.5	95.1
MGA_1673	LOCUS_16600	sequence1:1773934..1774281(-)	frameshift		1774065,1774342	WP_000179343.1	tyrosine-type recombinase/integrase	100.0	29.7	54.2
MGA_1769	LOCUS_17530	sequence1:1875664..1876767(-)	frameshift,internal_stop_codon	1875663..1875665(-)	1876778	WP_001557163.1	ISL3-like element IS1181 family transposase	100.0	83.6	97.3
MGA_1806	LOCUS_17900	sequence1:1919500..1920744(+)	partial			WP_011026975.1	lanthionine synthetase C family protein	75.1	69.1	24.1
MGA_1807	LOCUS_17910	sequence1:1920760..1921278(+)	partial			WP_010880496.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	77.9	35.3	38.0
MGA_1808	LOCUS_17920	sequence1:1921288..1922661(+)	partial			WP_000699969.1	S8 family serine peptidase	69.1	55.1	38.9
MGA_1821	LOCUS_18050	sequence1:1935709..1939821(+)	partial			WP_011391500.1	hypothetical protein	48.8	43.2	26.4
MGA_1822	LOCUS_18060	sequence1:1940341..1940718(+)	partial			WP_010989411.1	DUF1433 domain-containing protein	74.4	66.9	44.1
MGA_1823	LOCUS_18070	sequence1:1941588..1941731(+)	frameshift,internal_stop_codon	1941729..1941731(+)	1941740	WP_000159787.1	transposase	89.4	46.7	76.2
MGA_1846	LOCUS_18300	sequence1:1958765..1959373(-)	frameshift		1959408	WP_126475239.1	IS1182 family transposase	100.0	37.1	97.0
MGA_1847	LOCUS_18310	sequence1:1959406..1960230(-)	frameshift		1959408	WP_126475239.1	IS1182 family transposase	100.0	50.3	96.0
MGA_1868	LOCUS_18520	sequence1:1978114..1978605(+)	frameshift		1978579,1978165,1978774	WP_126475239.1	IS1182 family transposase	84.7	25.3	93.5
MGA_1869	LOCUS_18530	sequence1:1978602..1978826(+)	frameshift		1978578,1978773	WP_126475239.1	IS1182 family transposase	78.4	12.3	82.1
MGA_1894	LOCUS_18780	sequence1:2013050..2014090(+)	partial			WP_000193903.1	hypothetical protein	84.1	62.4	73.2
MGA_1902	LOCUS_18860	sequence1:2026540..2026740(-)	frameshift		2026850	WP_000184370.1	transglycosylase domain-containing protein	100.0	21.9	98.5
MGA_1903	LOCUS_18870	sequence1:2026689..2027444(-)	frameshift		2026850	WP_000184370.1	transglycosylase domain-containing protein	78.9	65.8	94.9
MGA_1935	LOCUS_19190	sequence1:2066346..2067173(+)	frameshift,internal_stop_codon	2067147..2067149(+)	2067146	WP_126475239.1	IS1182 family transposase	95.3	48.1	94.3
MGA_1936	LOCUS_19200	sequence1:2067191..2067997(+)	frameshift,internal_stop_codon	2067147..2067149(+)	2067146	WP_126475239.1	IS1182 family transposase	100.0	49.2	96.6
MGA_2000	LOCUS_19840	sequence1:2137861..2138007(+)	partial			WP_000009238.1	SAS049 family protein	72.9	72.9	100.0
MGA_2047	LOCUS_20310	sequence1:2185675..2185851(+)	partial			WP_000048060.1	30S ribosomal protein S21	74.1	74.1	100.0
MGA_2136	LOCUS_21200	sequence1:2267275..2267481(+)	partial			WP_001033761.1	hypothetical protein	92.6	8.8	63.5
MGA_2216	LOCUS_22000	sequence1:2381402..2381794(+)	frameshift		2381767	WP_126475239.1	IS1182 family transposase	67.7	16.1	87.5
MGA_2217	LOCUS_22010	sequence1:2381812..2382006(+)	frameshift		2381767	WP_126475239.1	IS1182 family transposase	100.0	11.7	98.4
MGA_2233	LOCUS_22170	sequence1:2397628..2397924(-)	partial			WP_126475239.1	IS1182 family transposase	99.0	17.8	94.8
MGA_2307	LOCUS_22910	sequence1:2479148..2479489(-)	partial			WP_002485350.1	minor capsid protein	100.0	25.2	71.7
MGA_2309	LOCUS_22930	sequence1:2479744..2480034(-)	internal_stop_codon	2480044..2480046(-),2480125..2480127(-)		WP_002485350.1	minor capsid protein	94.8	22.8	45.1
MGA_2313	LOCUS_22970	sequence1:2481508..2482092(-)	partial			WP_002485350.1	minor capsid protein	68.6	35.5	56.0
MGA_2385	LOCUS_23690	sequence1:2567315..2568673(+)	partial			WP_000915238.1	lipoteichoic acid-specific glycosyltransferase YfhO	100.0	52.1	93.4
MGA_2413	LOCUS_23970	sequence1:2597468..2597671(+)	partial			WP_001548522.1	TM2 domain-containing protein	100.0	72.8	100.0
MGA_2432	LOCUS_24160	sequence1:2619583..2619777(+)	partial			WP_126475239.1	IS1182 family transposase	81.2	9.5	98.1
MGA_2471	LOCUS_24550	sequence1:2658223..2658549(-)	internal_stop_codon	2658223..2658225(-)		WP_000584398.1	hypothetical protein	91.7	58.9	87.9
MGA_2548	LOCUS_25320	sequence1:2736527..2736661(+)	partial			WP_000064214.1	glycopeptide resistance-associated protein GraF	54.5	54.5	100.0
MGA_2576	LOCUS_25590	sequence2:7208..7543(-)	partial			WP_031588332.1	recombinase family protein	100.0	55.8	99.1
