{ "type": "genome", "identifier": "GCF_022869785.1", "organism": "Dyadobacter chenwenxiniae", "title": "Dyadobacter chenwenxiniae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022869785.1", "bioproject": "PRJNA224116", "biosample": "SAMN27257231", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2906456", "species_taxid": "2906456", "organism_name": "Dyadobacter chenwenxiniae", "infraspecific_name": "strain=LJ419", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/11", "asm_name": "ASM2286978v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_022869785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/869/785/GCF_022869785.1_ASM2286978v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7171767", "genome_size_ungapped": "7171767", "gc_percent": "45.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022869785.1-RS_2024_09_16", "annotation_date": "2024-09-16", "total_gene_count": "6216", "protein_coding_gene_count": "6108", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-11", "dateModified": "2022-04-11", "datePublished": "2022-04-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Dyadobacter chenwenxiniae" ], "sample_taxid": [ "2906456" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qinghai" ], "sample_host_location_id": [], "data_size": "2.037 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7171767", "Number of Sequences": "1", "Longest Sequences (bp)": "7171767", "N50 (bp)": "7171767", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.2", "Number of CDSs": "6150", "Average Protein Length": "346.2", "Coding Ratio (%)": "89.1", "Number of rRNAs": "6", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dyadobacter psychrophilus", "strain": "strain=DSM 22270", "accession": "GCA_900167945.1", "taxid": 651661, "species_taxid": 651661, "relation_to_type": "type", "validated": true, "ani": 84.3134, "matched_fragments": 1662, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter alkalitolerans", "strain": "strain=DSM 23607", "accession": "GCA_000428845.1", "taxid": 492736, "species_taxid": 492736, "relation_to_type": "type", "validated": true, "ani": 83.3162, "matched_fragments": 1412, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter bucti", "strain": "strain=QTA69", "accession": "GCA_005869225.1", "taxid": 2572203, "species_taxid": 2572203, "relation_to_type": "type", "validated": true, "ani": 78.387, "matched_fragments": 626, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter crusticola", "strain": "strain=DSM 16708", "accession": "GCA_000701505.1", "taxid": 292407, "species_taxid": 292407, "relation_to_type": "type", "validated": true, "ani": 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2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter koreensis", "strain": "strain=DSM 19938", "accession": "GCA_900108855.1", "taxid": 408657, "species_taxid": 408657, "relation_to_type": "type", "validated": true, "ani": 77.83, "matched_fragments": 316, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter jiangsuensis", "strain": "strain=DSM 29057", "accession": "GCA_003014695.1", "taxid": 1591085, "species_taxid": 1591085, "relation_to_type": "type", "validated": true, "ani": 77.7179, "matched_fragments": 552, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter sandarakinus", "strain": "strain=Q3-56", "accession": "GCA_016894445.1", "taxid": 2747268, "species_taxid": 2747268, "relation_to_type": "type", "validated": true, "ani": 77.7003, "matched_fragments": 440, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=CGMCC 1.6375", "accession": "GCA_014645155.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 77.6985, "matched_fragments": 567, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter beijingensis", "strain": "strain=DSM 21582", "accession": "GCA_000382205.1", "taxid": 365489, "species_taxid": 365489, "relation_to_type": "type", "validated": true, "ani": 77.679, "matched_fragments": 573, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dyadobacter psychrotolerans", "strain": "strain=AR-3-6", "accession": "GCA_004349265.1", "taxid": 2541721, "species_taxid": 2541721, "relation_to_type": "type", "validated": true, "ani": 77.6216, "matched_fragments": 394, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"status": "-" }, { "accession": "GCF_907165045.1", "gtdb_species": "s__Dyadobacter sp907165045", "ani": 78.5485, "matched_fragments": 609, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008369915.1", "gtdb_species": "s__Dyadobacter sp008369915", "ani": 78.3934, "matched_fragments": 633, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Spirosomaceae;g__Dyadobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005869225.1", "gtdb_species": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Dyadobacter", "chenwenxiniae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }