{
    "type": "genome",
    "identifier": "GCF_022869965.1",
    "organism": "Salmonella enterica subsp. enterica",
    "title": "Salmonella enterica subsp. enterica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022869965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN14078794",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "59201",
        "species_taxid": "28901",
        "organism_name": "Salmonella enterica subsp. enterica",
        "infraspecific_name": "strain=PartC-Senterica-RM8376",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/11",
        "asm_name": "ASM2286996v1",
        "asm_submitter": "National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute",
        "gbrs_paired_asm": "GCA_022869965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/869/965/GCF_022869965.1_ASM2286996v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4951425",
        "genome_size_ungapped": "4951425",
        "gc_percent": "52.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022869965.1-RS_2024_06_02",
        "annotation_date": "2024-06-02",
        "total_gene_count": "4832",
        "protein_coding_gene_count": "4606",
        "non_coding_gene_count": "125",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-11",
    "dateModified": "2022-04-11",
    "datePublished": "2022-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Salmonella enterica subsp. enterica"
        ],
        "sample_taxid": [
            "59201"
        ],
        "sample_host_organism": [
            "missing"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "missing"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.404 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4951425",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "4857492",
        "N50 (bp)": "4857492",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "52.2",
        "Number of CDSs": "4610",
        "Average Protein Length": "310.6",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "22",
        "Number of tRNAs": "86",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=PartC-Senterica-RM8376",
                "accession": "GCA_022869965.1",
                "taxid": 59201,
                "species_taxid": 28901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1648,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica",
                "strain": "strain=FDAARGOS_768",
                "accession": "GCA_006365335.1",
                "taxid": 28901,
                "species_taxid": 28901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9988,
                "matched_fragments": 1647,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica",
                "strain": "strain=FDAARGOS_878",
                "accession": "GCA_016028495.1",
                "taxid": 28901,
                "species_taxid": 28901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9966,
                "matched_fragments": 1644,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=LT2",
                "accession": "GCA_002289225.1",
                "taxid": 59201,
                "species_taxid": 28901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9697,
                "matched_fragments": 1605,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salmonella enterica subsp. enterica",
                "strain": "strain=LT2",
                "accession": "GCA_010649825.1",
                "taxid": 59201,
                "species_taxid": 28901,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.9629,
                "matched_fragments": 1591,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Citrobacter rodentium",
                "strain": "strain=DSM 16636",
                "accession": "GCA_021278985.1",
                "taxid": 67825,
                "species_taxid": 67825,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1097,
                "matched_fragments": 988,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.5322,
                "matched_fragments": 788,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2221,
                "matched_fragments": 769,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
                "taxid": 2071710,
                "species_taxid": 2071710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.099,
                "matched_fragments": 754,
                "total_fragments": 1650,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000006945.2",
                "gtdb_species": "s__Salmonella enterica",
                "ani": 99.9994,
                "matched_fragments": 1646,
                "total_fragments": 1650,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella",
                "ani_circumscription_radius": 95.0604,
                "mean_intra_species_ani": "98.80",
                "min_intra_species_ani": "95.43",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 12285,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_008692785.1",
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                "matched_fragments": 1289,
                "total_fragments": 1650,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella",
                "ani_circumscription_radius": 95.0604,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "95.36",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 98,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_900478215.1",
                "gtdb_species": "s__Salmonella houtenae",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "96.71",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 62,
                "status": "-"
            },
            {
                "accession": "GCF_008692845.1",
                "gtdb_species": "s__Salmonella arizonae",
                "ani": 93.1147,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.33",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 67,
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            },
            {
                "accession": "GCF_000252995.1",
                "gtdb_species": "s__Salmonella bongori",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 32,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": null,
        "doubling_h": -0.36,
        "growth_tmp": 36.956,
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        "rRNA16S_genes": 6.931,
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        "sporulation": 0.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Salmonella",
        "enterica",
        "subsp.",
        "enterica"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}