{
    "type": "genome",
    "identifier": "GCF_022871005.1",
    "organism": "Kingella kingae",
    "title": "Kingella kingae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INRS-Centre Armand-Frappier Sante Biotechnologie",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022871005.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN24043407",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "504",
        "species_taxid": "504",
        "organism_name": "Kingella kingae",
        "infraspecific_name": "strain=4177/66",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/11",
        "asm_name": "ASM2287100v1",
        "asm_submitter": "INRS-Centre Armand-Frappier Sante Biotechnologie",
        "gbrs_paired_asm": "GCA_022871005.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/871/005/GCF_022871005.1_ASM2287100v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2006535",
        "genome_size_ungapped": "2006535",
        "gc_percent": "46.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022871005.1-RS_2024_03_29",
        "annotation_date": "2024-03-29",
        "total_gene_count": "2128",
        "protein_coding_gene_count": "1998",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-11",
    "dateModified": "2022-04-11",
    "datePublished": "2022-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kingella kingae"
        ],
        "sample_taxid": [
            "504"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Norway"
        ],
        "sample_host_location_id": [],
        "data_size": "0.552 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2006535",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2006535",
        "N50 (bp)": "2006535",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "2040",
        "Average Protein Length": "285.1",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "12",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Kingella kingae",
                "strain": "strain=4177/66",
                "accession": "GCA_022871005.1",
                "taxid": 504,
                "species_taxid": 504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 665,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kingella kingae",
                "strain": "strain=NCTC10529",
                "accession": "GCA_900475905.1",
                "taxid": 504,
                "species_taxid": 504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9981,
                "matched_fragments": 662,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kingella kingae",
                "strain": "strain=ATCC 23330",
                "accession": "GCA_900111845.1",
                "taxid": 504,
                "species_taxid": 504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9339,
                "matched_fragments": 617,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kingella kingae",
                "strain": "strain=ATCC 23330",
                "accession": "GCA_000213535.1",
                "taxid": 504,
                "species_taxid": 504,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.812,
                "matched_fragments": 647,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Simonsiella muelleri",
                "strain": "strain=ATCC 29453",
                "accession": "GCA_002951835.1",
                "taxid": 72,
                "species_taxid": 72,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4682,
                "matched_fragments": 254,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alysiella crassa",
                "strain": "strain=S6",
                "accession": "GCA_022871045.1",
                "taxid": 153491,
                "species_taxid": 153491,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9375,
                "matched_fragments": 343,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alysiella filiformis",
                "strain": "strain=DSM 16848",
                "accession": "GCA_014054525.1",
                "taxid": 194196,
                "species_taxid": 194196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.8573,
                "matched_fragments": 348,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kingella denitrificans",
                "strain": "strain=ATCC 33394",
                "accession": "GCA_000190695.1",
                "taxid": 502,
                "species_taxid": 502,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1973,
                "matched_fragments": 279,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conchiformibius steedae",
                "strain": "strain=DSM 2580",
                "accession": "GCA_023547005.1",
                "taxid": 153493,
                "species_taxid": 153493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7218,
                "matched_fragments": 219,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Uruburuella testudinis",
                "strain": "strain=CCUG 63373m",
                "accession": "GCA_022870865.1",
                "taxid": 1282863,
                "species_taxid": 1282863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6855,
                "matched_fragments": 112,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Neisseria cinerea",
                "strain": "strain=CCUG 2156",
                "accession": "GCA_021025975.1",
                "taxid": 483,
                "species_taxid": 483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4039,
                "matched_fragments": 112,
                "total_fragments": 668,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900111845.1",
                "gtdb_species": "s__Kingella kingae",
                "ani": 99.9339,
                "matched_fragments": 617,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 37,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000751855.1",
                "gtdb_species": "s__Kingella negevensis",
                "ani": 85.0316,
                "matched_fragments": 324,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002951835.1",
                "gtdb_species": "s__Simonsiella muelleri",
                "ani": 80.5639,
                "matched_fragments": 254,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Simonsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.93",
                "min_intra_species_ani": "99.93",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014054525.1",
                "gtdb_species": "s__Alysiella filiformis",
                "ani": 79.901,
                "matched_fragments": 352,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Alysiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000745955.1",
                "gtdb_species": "s__Alysiella crassa",
                "ani": 79.8945,
                "matched_fragments": 321,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Alysiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.94",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014054985.1",
                "gtdb_species": "s__Kingella_B oralis",
                "ani": 78.3128,
                "matched_fragments": 259,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_B",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000190695.1",
                "gtdb_species": "s__Kingella_A denitrificans",
                "ani": 78.241,
                "matched_fragments": 275,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Kingella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "96.04",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_017446355.1",
                "gtdb_species": "s__RGIG3394 sp017446355",
                "ani": 77.614,
                "matched_fragments": 108,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__RGIG3394",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900637855.1",
                "gtdb_species": "s__Neisseria animaloris",
                "ani": 77.4058,
                "matched_fragments": 105,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.59",
                "min_intra_species_ani": "98.11",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001027865.1",
                "gtdb_species": "s__Neisseria arctica",
                "ani": 76.9102,
                "matched_fragments": 68,
                "total_fragments": 668,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Neisseriaceae;g__Neisseria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 35.0,
        "optimum_tmp": 35.0,
        "optimum_ph": null,
        "genome_size": 1904888.314,
        "gc_content": 46.55,
        "coding_genes": 2114.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 54.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Kingella",
        "kingae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}