{ "type": "genome", "identifier": "GCF_022898935.1", "organism": "Paenibacillus mangrovi", "title": "Paenibacillus mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Life sciences Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022898935.1", "bioproject": "PRJNA224116", "biosample": "SAMN27187613", "wgs_master": "JALIRP000000000.1", "refseq_category": "reference genome", "taxid": "2931978", "species_taxid": "2931978", "organism_name": "Paenibacillus mangrovi", "infraspecific_name": "strain=KQZ6P-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/11", "asm_name": "ASM2289893v1", "asm_submitter": "Life sciences Institute", "gbrs_paired_asm": "GCA_022898935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/898/935/GCF_022898935.1_ASM2289893v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5937633", "genome_size_ungapped": "5937633", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022898935.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "5439", "protein_coding_gene_count": "5231", "non_coding_gene_count": "135", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-11", "dateModified": "2022-04-11", "datePublished": "2022-04-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus mangrovi" ], "sample_taxid": [ "2931978" ], "sample_host_organism": [ "Kandelia candel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Guangxi" ], "sample_host_location_id": [], "data_size": "1.695 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5937633", "Number of Sequences": "32", "Longest Sequences (bp)": "997330", "N50 (bp)": "486504", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.2", "Number of CDSs": "5365", "Average Protein Length": "319.5", "Coding Ratio (%)": "86.6", "Number of rRNAs": "10", "Number of tRNAs": "98", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus dokdonensis", "strain": "strain=YH-JAE5", "accession": "GCA_004916975.1", "taxid": 2567944, "species_taxid": 2567944, "relation_to_type": "type", "validated": true, "ani": 83.085, "matched_fragments": 1086, "total_fragments": 1966, 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"organism_name": "Paenibacillus pini", "strain": "strain=JCM 16418", "accession": "GCA_001315125.1", "taxid": 669461, "species_taxid": 669461, "relation_to_type": "type", "validated": true, "ani": 78.3624, "matched_fragments": 293, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus uliginis", "strain": "strain=N3/975", "accession": "GCA_900177425.1", "taxid": 683737, "species_taxid": 683737, "relation_to_type": "type", "validated": true, "ani": 78.3017, "matched_fragments": 281, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus lautus", "strain": "strain=NBRC 15380", "accession": "GCA_004000945.1", "taxid": 1401, "species_taxid": 1401, "relation_to_type": "suspected-type", "validated": true, "ani": 78.1053, "matched_fragments": 289, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus dakarensis", "strain": "strain=FF9", "accession": "GCA_001373415.1", "taxid": 1527293, "species_taxid": 1527293, "relation_to_type": "type", "validated": true, "ani": 77.9537, "matched_fragments": 179, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus rhizophilus", "strain": "strain=7197", "accession": "GCA_003854965.1", "taxid": 1850366, "species_taxid": 1850366, "relation_to_type": "type", "validated": true, "ani": 77.7266, "matched_fragments": 171, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus algicola", "strain": "strain=HB172198", "accession": "GCA_005577435.1", "taxid": 2565926, "species_taxid": 2565926, "relation_to_type": "type", "validated": true, "ani": 77.726, "matched_fragments": 158, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus solani", "strain": "strain=FJAT-22460", "accession": "GCA_001277345.1", "taxid": 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"validated": true, "ani": 77.4684, "matched_fragments": 212, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus typhae", "strain": "strain=CGMCC 1.11012", "accession": "GCA_900099765.1", "taxid": 1174501, "species_taxid": 1174501, "relation_to_type": "type", "validated": true, "ani": 77.3836, "matched_fragments": 194, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus physcomitrellae", "strain": "strain=XB", "accession": "GCA_002240225.1", "taxid": 1619311, "species_taxid": 1619311, "relation_to_type": "type", "validated": true, "ani": 77.3782, "matched_fragments": 189, "total_fragments": 1966, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus tritici", "strain": "strain=LMG 29502", "accession": "GCA_013204885.1", "taxid": 1873425, "species_taxid": 1873425, "relation_to_type": "type", "validated": true, "ani": 77.3743, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "mangrovi" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }