{ "type": "genome", "identifier": "GCF_022919135.1", "organism": "Hymenobacter cellulosivorans", "title": "Hymenobacter cellulosivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022919135.1", "bioproject": "PRJNA224116", "biosample": "SAMN27281869", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2932249", "species_taxid": "2932249", "organism_name": "Hymenobacter cellulosivorans", "infraspecific_name": "strain=5116 S-27", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/12", "asm_name": "ASM2291913v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_022919135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/919/135/GCF_022919135.1_ASM2291913v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6101666", "genome_size_ungapped": "6101666", "gc_percent": "59.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022919135.1-RS_2024_09_23", "annotation_date": "2024-09-23", "total_gene_count": "5210", "protein_coding_gene_count": "5106", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-12", "dateModified": "2022-04-12", "datePublished": "2022-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter cellulosivorans" ], "sample_taxid": [ "2932249" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeonggi-do, Suwon-si" ], "sample_host_location_id": [], "data_size": "1.715 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6101666", "Number of Sequences": "1", "Longest Sequences (bp)": "6101666", "N50 (bp)": "6101666", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.4", "Number of CDSs": "5274", "Average Protein Length": "334.1", "Coding Ratio (%)": "86.6", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, 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"matched_fragments": 926, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 80.0109, "matched_fragments": 887, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 79.9086, "matched_fragments": 917, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 79.6644, "matched_fragments": 848, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 79.636, "matched_fragments": 899, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 79.1194, "matched_fragments": 816, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter citatus", "strain": "strain=BT507", "accession": "GCA_014333615.1", "taxid": 2763506, "species_taxid": 2763506, "relation_to_type": "type", "validated": true, "ani": 78.7656, "matched_fragments": 705, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter profundi", "strain": "strain=M2", "accession": "GCA_019334315.1", "taxid": 1982110, "species_taxid": 1982110, "relation_to_type": "type", "validated": true, "ani": 78.4703, "matched_fragments": 643, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus aquaedulcis", "strain": "strain=SYSU M42101", "accession": "GCA_019693445.1", "taxid": 2840455, "species_taxid": 2840455, "relation_to_type": "type", "validated": true, "ani": 74.8605, "matched_fragments": 51, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Deinococcus multiflagellatus", "strain": "strain=KACC 19287", "accession": "GCA_020166415.1", "taxid": 1656887, "species_taxid": 1656887, "relation_to_type": "type", "validated": true, "ani": 74.819, "matched_fragments": 56, "total_fragments": 2033, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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