{ "type": "genome", "identifier": "GCF_022919155.1", "organism": "Leucobacter allii", "title": "Leucobacter allii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022919155.1", "bioproject": "PRJNA224116", "biosample": "SAMN27281759", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2932247", "species_taxid": "2932247", "organism_name": "Leucobacter allii", "infraspecific_name": "strain=H21R-40", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/12", "asm_name": "ASM2291915v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_022919155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/919/155/GCF_022919155.1_ASM2291915v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3562128", "genome_size_ungapped": "3562128", "gc_percent": "72.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022919155.1-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "3336", "protein_coding_gene_count": "3237", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-12", "dateModified": "2022-04-12", "datePublished": "2022-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter allii" ], "sample_taxid": [ "2932247" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju-do, Seogwipo-si, Daejeong-eup" ], "sample_host_location_id": [], "data_size": "0.941 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3562128", "Number of Sequences": "1", "Longest Sequences (bp)": "3562128", "N50 (bp)": "3562128", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.9", "Number of CDSs": "3322", "Average Protein Length": "326.7", "Coding Ratio (%)": "91.4", "Number of rRNAs": "9", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 82.1389, "matched_fragments": 641, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 82.1028, "matched_fragments": 602, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=JG 31", "accession": "GCA_000231305.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 82.0785, "matched_fragments": 596, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=DSM 22788", "accession": "GCA_900102345.1", "taxid": 1079994, "species_taxid": 1079994, "relation_to_type": "type", "validated": true, "ani": 82.0207, "matched_fragments": 627, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter celer subsp. astrifaciens", "strain": "strain=CBX151", "accession": "GCA_001273835.1", "taxid": 1461260, "species_taxid": 668625, "relation_to_type": "type", "validated": true, "ani": 82.0141, "matched_fragments": 676, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter triazinivorans", "strain": "strain=JW-1", "accession": "GCA_004208635.1", "taxid": 1784719, "species_taxid": 1784719, "relation_to_type": "type", "validated": true, "ani": 81.9588, "matched_fragments": 621, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter massiliensis", "strain": "strain=122RC15", "accession": "GCA_002982315.1", "taxid": 1686285, "species_taxid": 1686285, "relation_to_type": "type", "validated": true, "ani": 81.8327, "matched_fragments": 586, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 81.7918, "matched_fragments": 633, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter ruminantium", "strain": "strain=A2", "accession": "GCA_017565705.1", "taxid": 1289170, "species_taxid": 1289170, "relation_to_type": "type", "validated": true, "ani": 81.7674, "matched_fragments": 555, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, "species_taxid": 2796471, "relation_to_type": "type", "validated": true, "ani": 81.237, "matched_fragments": 552, "total_fragments": 1187, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", 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