{ "type": "genome", "identifier": "GCF_022919175.1", "organism": "Leucobacter rhizosphaerae", "title": "Leucobacter rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022919175.1", "bioproject": "PRJNA224116", "biosample": "SAMN27281701", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2932245", "species_taxid": "2932245", "organism_name": "Leucobacter rhizosphaerae", "infraspecific_name": "strain=H25R-14", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/12", "asm_name": "ASM2291917v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_022919175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/919/175/GCF_022919175.1_ASM2291917v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3337834", "genome_size_ungapped": "3337834", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022919175.1-RS_2024_05_21", "annotation_date": "2024-05-21", "total_gene_count": "3097", "protein_coding_gene_count": "3015", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-12", "dateModified": "2022-04-12", "datePublished": "2022-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter rhizosphaerae" ], "sample_taxid": [ "2932245" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: National Institute of Agricultural Sciences" ], "sample_host_location_id": [], "data_size": "0.898 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3337834", "Number of Sequences": "1", "Longest Sequences (bp)": "3337834", "N50 (bp)": "3337834", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.3", "Number of CDSs": "3072", "Average Protein Length": "333.2", "Coding Ratio (%)": "92.0", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", 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true, "ani": 81.1479, "matched_fragments": 588, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter zeae", "strain": "strain=CC-MF41", "accession": "GCA_016758175.1", "taxid": 1257004, "species_taxid": 1257004, "relation_to_type": "type", "validated": true, "ani": 81.1238, "matched_fragments": 580, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chromiisoli", "strain": "strain=CSA1", "accession": "GCA_016522505.1", "taxid": 2796471, "species_taxid": 2796471, "relation_to_type": "type", "validated": true, "ani": 81.0341, "matched_fragments": 498, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_004217175.1", "taxid": 340320, "species_taxid": 340320, "relation_to_type": "suspected-type", "validated": true, "ani": 80.978, "matched_fragments": 593, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter luti", "strain": "strain=RF6", "accession": "GCA_016758235.1", "taxid": 340320, "species_taxid": 340320, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9713, "matched_fragments": 591, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter massiliensis", "strain": "strain=122RC15", "accession": "GCA_002982315.1", "taxid": 1686285, "species_taxid": 1686285, "relation_to_type": "type", "validated": true, "ani": 80.786, "matched_fragments": 531, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter soli", "strain": "strain=CIP 111803", "accession": "GCA_910593785.1", "taxid": 2812850, "species_taxid": 2812850, "relation_to_type": "type", "validated": true, "ani": 80.3321, "matched_fragments": 438, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 78.1255, "matched_fragments": 308, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 77.9157, "matched_fragments": 283, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium gallinarum", "strain": "strain=Sa1CUA4", "accession": "GCA_014837165.1", "taxid": 2762209, "species_taxid": 2762209, "relation_to_type": "type", "validated": true, "ani": 77.8023, "matched_fragments": 256, "total_fragments": 1112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=LMG8786T", "accession": 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