{ "type": "genome", "identifier": "GCF_022921055.1", "organism": "Hymenobacter volaticus", "title": "Hymenobacter volaticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022921055.1", "bioproject": "PRJNA224116", "biosample": "SAMN27282198", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2932254", "species_taxid": "2932254", "organism_name": "Hymenobacter volaticus", "infraspecific_name": "strain=5420 S-77", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/12", "asm_name": "ASM2292105v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_022921055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/921/055/GCF_022921055.1_ASM2292105v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7126218", "genome_size_ungapped": "7126218", "gc_percent": "54.000000", "replicon_count": "10", "scaffold_count": "10", "contig_count": "10", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-09-24", "total_gene_count": "6352", "protein_coding_gene_count": "5980", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-12", "dateModified": "2022-04-12", "datePublished": "2022-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter volaticus" ], "sample_taxid": [ "2932254" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeonggi-do, Suwon-si" ], "sample_host_location_id": [], "data_size": "2.029 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7126218", "Number of Sequences": "10", "Longest Sequences (bp)": "5309762", "N50 (bp)": "5309762", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.1", "Number of CDSs": "6380", "Average Protein Length": "303.0", "Coding Ratio (%)": "81.4", "Number of rRNAs": "10", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 81.033, "matched_fragments": 1118, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter norwichensis", "strain": "strain=DSM 15439", "accession": "GCA_000420705.1", "taxid": 223903, "species_taxid": 223903, "relation_to_type": "type", "validated": true, "ani": 80.6315, "matched_fragments": 1090, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter duratus", "strain": "strain=BT646", "accession": "GCA_014698995.1", "taxid": 2771356, "species_taxid": 2771356, "relation_to_type": "type", "validated": true, "ani": 79.1669, "matched_fragments": 734, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrotolerans", "strain": "strain=DSM 18569", "accession": "GCA_900142395.1", "taxid": 344998, "species_taxid": 344998, "relation_to_type": "type", "validated": true, "ani": 79.1645, "matched_fragments": 760, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 78.8477, "matched_fragments": 642, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 78.6814, "matched_fragments": 669, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter gelipurpurascens", "strain": "strain=DSM 11116", "accession": "GCA_900187375.1", "taxid": 89968, "species_taxid": 89968, "relation_to_type": "type", "validated": true, "ani": 78.6701, "matched_fragments": 631, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 78.5524, "matched_fragments": 644, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 78.5037, "matched_fragments": 651, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter wooponensis", "strain": "strain=JCM 19491", "accession": "GCA_004745865.1", "taxid": 1525360, "species_taxid": 1525360, "relation_to_type": "type", "validated": true, "ani": 78.3759, "matched_fragments": 650, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 78.3677, "matched_fragments": 663, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 78.2957, "matched_fragments": 563, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sediminis", "strain": "strain=ELS1360", "accession": "GCA_003231285.1", "taxid": 2218621, "species_taxid": 2218621, "relation_to_type": "type", "validated": true, "ani": 78.2911, "matched_fragments": 656, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, "species_taxid": 89969, "relation_to_type": "type", "validated": true, "ani": 78.2744, "matched_fragments": 694, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter fodinae", "strain": "strain=92R-1", "accession": "GCA_004745825.1", "taxid": 2510796, "species_taxid": 2510796, "relation_to_type": "type", "validated": true, "ani": 78.2365, "matched_fragments": 667, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter jejuensis", "strain": "strain=17J68-5", "accession": "GCA_006337165.1", "taxid": 2502781, "species_taxid": 2502781, "relation_to_type": "type", "validated": true, "ani": 77.8498, "matched_fragments": 520, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter profundi", "strain": "strain=M2", "accession": "GCA_019334315.1", "taxid": 1982110, "species_taxid": 1982110, "relation_to_type": "type", "validated": true, "ani": 77.7915, "matched_fragments": 525, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter edaphi", "strain": "strain=NL", "accession": "GCA_003258365.1", "taxid": 2211146, "species_taxid": 2211146, "relation_to_type": "type", "validated": true, "ani": 77.6657, "matched_fragments": 555, "total_fragments": 2369, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.62, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_017313265.1", "gtdb_species": "s__Hymenobacter sp017313265", "ani": 81.0563, "matched_fragments": 1114, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000420705.1", "gtdb_species": "s__Hymenobacter norwichensis", "ani": 80.6417, "matched_fragments": 1087, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000737515.1", "gtdb_species": "s__Hymenobacter sp000737515", "ani": 79.3554, "matched_fragments": 801, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142395.1", "gtdb_species": "s__Hymenobacter psychrotolerans", "ani": 79.1707, "matched_fragments": 759, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018145755.1", "gtdb_species": "s__Hymenobacter sp018145755", "ani": 79.1608, "matched_fragments": 735, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014333525.1", "gtdb_species": "s__Hymenobacter sp014333525", "ani": 79.131, "matched_fragments": 723, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014250515.1", "gtdb_species": "s__Hymenobacter sp014250515", "ani": 79.0408, "matched_fragments": 697, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900187375.1", "gtdb_species": "s__Hymenobacter gelipurpurascens", "ani": 78.6665, "matched_fragments": 632, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000576555.1", "gtdb_species": "s__Hymenobacter swuensis", "ani": 78.5513, "matched_fragments": 644, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013137895.1", "gtdb_species": "s__Hymenobacter sp013137895", "ani": 78.5498, "matched_fragments": 586, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014640315.1", "gtdb_species": "s__Hymenobacter glacieicola", "ani": 78.5219, "matched_fragments": 648, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745865.1", "gtdb_species": "s__Hymenobacter wooponensis", "ani": 78.3959, "matched_fragments": 646, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003944715.1", "gtdb_species": "s__Hymenobacter rigui", "ani": 78.3618, "matched_fragments": 664, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003944705.1", "gtdb_species": "s__Hymenobacter metallilatus", "ani": 78.3019, "matched_fragments": 561, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797555.1", "gtdb_species": "s__Hymenobacter chitinivorans", "ani": 78.28, "matched_fragments": 693, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745825.1", "gtdb_species": "s__Hymenobacter sp004745825", "ani": 78.2474, "matched_fragments": 665, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006337165.1", "gtdb_species": "s__Hymenobacter jejuensis", "ani": 77.8498, "matched_fragments": 520, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.30", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001483135.1", "gtdb_species": "s__Solirubrum puertoriconensis", "ani": 77.5477, "matched_fragments": 417, "total_fragments": 2369, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Solirubrum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.338, "doubling_h": null, "growth_tmp": 25.583, "optimum_tmp": 23.888, "optimum_ph": 7.3, "genome_size": 5095981.0, "gc_content": 60.5, "coding_genes": 4057.5, "rRNA16S_genes": 3.0, "tRNA_genes": 43.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Hymenobacter", "volaticus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }