{ "type": "genome", "identifier": "GCF_022921095.1", "organism": "Hymenobacter aerilatus", "title": "Hymenobacter aerilatus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022921095.1", "bioproject": "PRJNA224116", "biosample": "SAMN27282158", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2932251", "species_taxid": "2932251", "organism_name": "Hymenobacter aerilatus", "infraspecific_name": "strain=5413 J-13", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/12", "asm_name": "ASM2292109v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_022921095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/921/095/GCF_022921095.1_ASM2292109v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5279535", "genome_size_ungapped": "5279535", "gc_percent": "56.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022921095.1-RS_2024_09_23", "annotation_date": "2024-09-23", "total_gene_count": "4473", "protein_coding_gene_count": "4385", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-12", "dateModified": "2022-04-12", "datePublished": "2022-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter aerilatus" ], "sample_taxid": [ "2932251" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju-do, Jeju-si, Doryeonnam 6-gil" ], "sample_host_location_id": [], "data_size": "1.495 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5279535", "Number of Sequences": "3", "Longest Sequences (bp)": "5140525", "N50 (bp)": "5140525", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.6", "Number of CDSs": "4442", "Average Protein Length": "343.4", "Coding Ratio (%)": "86.7", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter citatus", "strain": "strain=BT507", "accession": "GCA_014333615.1", "taxid": 2763506, 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"validated": true, "ani": 78.9493, "matched_fragments": 780, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 78.9463, "matched_fragments": 674, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aquaticus", "strain": "strain=JCM 31653", "accession": "GCA_004765605.1", "taxid": 1867101, "species_taxid": 1867101, "relation_to_type": "type", "validated": true, "ani": 78.8787, "matched_fragments": 749, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 78.8089, "matched_fragments": 701, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 78.7178, "matched_fragments": 667, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 78.6575, "matched_fragments": 675, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter daecheongensis", "strain": "strain=DSM 21074", "accession": "GCA_900141805.1", "taxid": 496053, "species_taxid": 496053, "relation_to_type": "type", "validated": true, "ani": 78.6345, "matched_fragments": 646, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter persicinus", "strain": "strain=1-3-3-3", "accession": "GCA_004167665.1", "taxid": 2025506, "species_taxid": 2025506, "relation_to_type": "type", "validated": true, "ani": 78.6021, "matched_fragments": 646, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, "species_taxid": 89969, "relation_to_type": "type", "validated": true, "ani": 78.4544, "matched_fragments": 699, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 78.4355, "matched_fragments": 649, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter gummosus", "strain": "strain=KCTC 52166", "accession": "GCA_003970915.1", "taxid": 1776032, "species_taxid": 1776032, "relation_to_type": "type", "validated": true, "ani": 78.294, "matched_fragments": 714, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 78.1259, "matched_fragments": 625, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter cavernae", "strain": "strain=CGMCC 1.15197", "accession": "GCA_014641455.1", "taxid": 2044852, "species_taxid": 2044852, "relation_to_type": "type", "validated": true, "ani": 78.1184, "matched_fragments": 644, "total_fragments": 1759, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014333615.1", "gtdb_species": "s__Hymenobacter citatus", "ani": 86.223, "matched_fragments": 1373, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017589435.1", "gtdb_species": "s__Hymenobacter defluvii", "ani": 85.9786, "matched_fragments": 1370, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.38", "min_intra_species_ani": "96.38", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, 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"gtdb_species": "s__Hymenobacter sp017313265", "ani": 78.9499, "matched_fragments": 782, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004765605.1", "gtdb_species": "s__Hymenobacter aquaticus", "ani": 78.8873, "matched_fragments": 747, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003944765.1", "gtdb_species": "s__Hymenobacter perfusus", "ani": 78.8266, "matched_fragments": 698, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012273015.1", "gtdb_species": "s__Hymenobacter sp012273015", "ani": 78.7258, "matched_fragments": 619, "total_fragments": 1759, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900141805.1", "gtdb_species": "s__Hymenobacter daecheongensis", "ani": 78.6279, "matched_fragments": 647, 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Hymenobacter", "aerilatus" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }