{ "type": "genome", "identifier": "GCF_023016525.1", "organism": "Ancylobacter koreensis", "title": "Ancylobacter koreensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SciBear OU", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023016525.1", "bioproject": "PRJNA224116", "biosample": "SAMN27505140", "wgs_master": "JALKCG000000000.1", "refseq_category": "reference genome", "taxid": "266121", "species_taxid": "266121", "organism_name": "Ancylobacter koreensis", "infraspecific_name": "strain=Jip08", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/17", "asm_name": "ASM2301652v1", "asm_submitter": "SciBear OU", "gbrs_paired_asm": "GCA_023016525.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/016/525/GCF_023016525.1_ASM2301652v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4057091", "genome_size_ungapped": "4057091", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023016525.1-RS_2024_05_08", "annotation_date": "2024-05-08", "total_gene_count": "3802", "protein_coding_gene_count": "3717", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-17", "dateModified": "2022-04-17", "datePublished": "2022-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Ancylobacter koreensis" ], "sample_taxid": [ "266121" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.095 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4057091", "Number of Sequences": "19", "Longest Sequences (bp)": "1557427", "N50 (bp)": "616886", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "3796", "Average Protein Length": "318.5", "Coding Ratio (%)": "89.4", "Number of rRNAs": "6", "Number of tRNAs": "53", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1342, "total_fragments": 1345, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 86.8527, "matched_fragments": 1066, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 86.3373, "matched_fragments": 1001, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 85.7452, "matched_fragments": 1032, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter aquaticus", "strain": "strain=DSM 101", "accession": "GCA_004339465.1", "taxid": 100, "species_taxid": 100, "relation_to_type": "type", "validated": true, "ani": 85.5007, "matched_fragments": 1015, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter sonchi", "strain": "strain=VKM B-3145", "accession": "GCA_018390695.1", "taxid": 1937790, "species_taxid": 1937790, "relation_to_type": "type", "validated": true, "ani": 83.9421, "matched_fragments": 977, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 77.8562, "matched_fragments": 455, "total_fragments": 1345, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", 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"N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.165, "cell_length": -0.046, "doubling_h": null, "growth_tmp": 29.0, "optimum_tmp": 29.25, "optimum_ph": 6.975, "genome_size": 4505084.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.75, "coccus_cell_shape": 0.25, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ancylobacter", "koreensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }