{ "type": "genome", "identifier": "GCF_023016805.1", "organism": "Ancylobacter crimeensis", "title": "Ancylobacter crimeensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SciBear OU", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023016805.1", "bioproject": "PRJNA224116", "biosample": "SAMN27505146", "wgs_master": "JALKCH000000000.1", "refseq_category": "reference genome", "taxid": "2579147", "species_taxid": "2579147", "organism_name": "Ancylobacter crimeensis", "infraspecific_name": "strain=6x-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/17", "asm_name": "ASM2301680v1", "asm_submitter": "SciBear OU", "gbrs_paired_asm": "GCA_023016805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/016/805/GCF_023016805.1_ASM2301680v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4296055", "genome_size_ungapped": "4295855", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023016805.1-RS_2024_05_08", "annotation_date": "2024-05-08", "total_gene_count": "3911", "protein_coding_gene_count": "3807", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-17", "dateModified": "2022-04-17", "datePublished": "2022-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Ancylobacter crimeensis" ], "sample_taxid": [ "2579147" ], "sample_host_organism": [ "Quercus pubescens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia" ], "sample_host_location_id": [], "data_size": "1.175 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4296055", "Number of Sequences": "26", "Longest Sequences (bp)": "492395", "N50 (bp)": "389515", "Gap Ratio (%)": "0.004655", "GCcontent (%)": "67.3", "Number of CDSs": "3902", "Average Protein Length": "323.9", "Coding Ratio (%)": "88.3", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ancylobacter oerskovii", "strain": "strain=CCM 7435", "accession": "GCA_018390555.1", "taxid": 459519, "species_taxid": 459519, "relation_to_type": "type", "validated": true, "ani": 82.3894, "matched_fragments": 908, "total_fragments": 1420, 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"organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 82.0218, "matched_fragments": 789, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 81.9076, "matched_fragments": 827, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 81.7208, "matched_fragments": 786, "total_fragments": 1420, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter aquaticus", 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