{
    "type": "genome",
    "identifier": "GCF_023028345.1",
    "organism": "Halorientalis marina",
    "title": "Halorientalis marina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Jiangsu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023028345.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN27190925",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2931976",
        "species_taxid": "2931976",
        "organism_name": "Halorientalis marina",
        "infraspecific_name": "strain=GDY88",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/18",
        "asm_name": "ASM2302834v1",
        "asm_submitter": "Jiangsu University",
        "gbrs_paired_asm": "GCA_023028345.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/028/345/GCF_023028345.1_ASM2302834v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "4754137",
        "genome_size_ungapped": "4754137",
        "gc_percent": "65.500000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023028345.1-RS_2024_08_31",
        "annotation_date": "2024-08-31",
        "total_gene_count": "4844",
        "protein_coding_gene_count": "4683",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-18",
    "dateModified": "2022-04-18",
    "datePublished": "2022-04-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halorientalis marina"
        ],
        "sample_taxid": [
            "2931976"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Guangzhou, Guangdong"
        ],
        "sample_host_location_id": [],
        "data_size": "1.301 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
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            "max": null
        },
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        "strain_heterogeneity": 0.0,
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    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "4754137",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "3675221",
        "N50 (bp)": "3675221",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.4",
        "Number of CDSs": "4792",
        "Average Protein Length": "289.7",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Halorientalis persicus",
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                "accession": "GCA_900110215.1",
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                "species_taxid": 1367881,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis regularis",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "taxid": 2932266,
                "species_taxid": 2932266,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis pallida",
                "strain": "strain=F13-25",
                "accession": "GCA_004118325.1",
                "taxid": 2479928,
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                "relation_to_type": "type",
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                "matched_fragments": 755,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis salina",
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                "accession": "GCA_023566035.1",
                "taxid": 2932266,
                "species_taxid": 2932266,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 716,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis brevis",
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                "accession": "GCA_023077655.1",
                "taxid": 1126241,
                "species_taxid": 1126241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1248,
                "matched_fragments": 669,
                "total_fragments": 1584,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halapricum salinum",
                "strain": "strain=CBA1105",
                "accession": "GCA_000755225.1",
                "taxid": 1457250,
                "species_taxid": 1457250,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1373,
                "matched_fragments": 400,
                "total_fragments": 1584,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_900110215.1",
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                "total_fragments": 1584,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halorientalis",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900102305.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001989615.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halorientalis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_005049285.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halorientalis",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_004118325.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halorientalis",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
                "accession": "GCA_003021655.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__QS-4-69-31",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
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        ]
    },
    "_bac2feature": {
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
        "Halorientalis",
        "marina"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}