# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_8	LOCUS_00080	sequence01:6865..7608(-)	frameshift		7700	WP_002658381.1	AI-2E family transporter	97.2	66.3	69.6
MGA_9	LOCUS_00090	sequence01:7650..7937(-)	frameshift		7700	WP_002658381.1	AI-2E family transporter	70.5	18.5	47.8
MGA_22	LOCUS_00220	sequence01:18355..18690(-)	partial			WP_002658362.1	hypothetical protein	94.6	62.4	50.9
MGA_78	LOCUS_00780	sequence01:74618..75865(+)	partial			WP_004191984.1	lipoprotein-releasing ABC transporter permease subunit	67.5	68.1	19.5
MGA_117	LOCUS_01170	sequence01:117299..118162(-)	partial			WP_011962766.1	phosphatidate cytidylyltransferase	66.9	68.7	37.6
MGA_203	LOCUS_02030	sequence01:211831..214188(+)	partial			WP_020948717.1	surface-located membrane protein Lmp1	96.2	64.3	42.0
MGA_216	LOCUS_02160	sequence01:227278..227844(-)	frameshift		227836	WP_010890332.1	SIMPL domain-containing protein	99.5	81.0	57.2
MGA_227	LOCUS_02270	sequence01:237149..237604(-)	partial			WP_002662521.1	membrane protein	96.7	53.8	46.6
MGA_236	LOCUS_02360	sequence01:247457..247813(+)	internal_stop_codon	247811..247813(+)		WP_001831473.1	glycerol-3-phosphate transporter	94.1	24.6	57.7
MGA_237	LOCUS_02370	sequence01:247910..248137(+)	frameshift,internal_stop_codon	247811..247813(+)	248116	WP_003096330.1	glycerol-3-phosphate transporter	92.0	15.6	52.9
MGA_238	LOCUS_02380	sequence01:248073..248654(+)	frameshift,internal_stop_codon	248699..248701(+),247811..247813(+)	248625,248686,248116,248606	WP_000948705.1	glycerol-3-phosphate transporter	84.5	36.1	64.4
MGA_300	LOCUS_03000	sequence01:312888..313505(-)	partial			WP_014023546.1	putative lipid II flippase FtsW	100.0	56.3	76.1
MGA_355	LOCUS_03550	sequence01:370942..371223(+)	partial			WP_174220839.1	hypothetical protein	86.0	58.1	65.0
MGA_397	LOCUS_03970	sequence01:418725..419594(+)	partial			WP_002657869.1	DUF3996 domain-containing protein	57.4	81.8	48.2
MGA_435	LOCUS_04350	sequence01:468993..469403(+)	partial			WP_010932328.1	Hsp20/alpha crystallin family protein	73.5	75.0	42.0
MGA_437	LOCUS_04370	sequence01:471192..472436(-)	partial			WP_002665246.1	cation:proton antiporter	99.8	58.9	79.9
MGA_510	LOCUS_05100	sequence01:538255..539838(+)	partial			WP_011056995.1	SpoIIE family protein phosphatase	39.1	55.0	31.0
MGA_570	LOCUS_05700	sequence01:608941..609207(+)	frameshift,internal_stop_codon	608687..608689(+)	608948,608782	WP_002656553.1	MATE family efflux transporter	98.9	19.4	66.7
MGA_588	LOCUS_05880	sequence01:634033..634551(+)	partial			WP_002656803.1	J domain-containing protein	100.0	68.8	70.3
MGA_591	LOCUS_05910	sequence01:638233..639171(+)	partial			WP_002656414.1	D-alanyl-D-alanine carboxypeptidase family protein	93.3	71.6	63.2
MGA_611	LOCUS_06110	sequence01:662672..662992(-)	partial			WP_002657333.1	ribonuclease M5	91.5	54.1	57.1
MGA_644	LOCUS_06440	sequence01:705023..705679(-)	partial			WP_002657380.1	GTPase Era	93.1	70.0	65.0
MGA_652	LOCUS_06520	sequence01:710096..710332(+)	partial			WP_002657394.1	GerMN domain-containing protein	87.2	38.8	56.3
MGA_659	LOCUS_06590	sequence01:717000..717668(-)	partial			WP_002657405.1	hypothetical protein	99.1	63.2	73.6
MGA_795	LOCUS_07950	sequence01:864126..864977(+)	partial			WP_002660997.1	LptF/LptG family permease	100.0	66.0	74.2
MGA_813	LOCUS_08130	sequence01:881296..882735(-)	partial			WP_001023092.1	PTS N-acetyl glucosamine transporter subunit IIABC	99.0	71.3	45.1
MGA_827	LOCUS_08270	sequence01:910146..910547(-)	frameshift		910600	WP_002657290.1	hypothetical protein	95.5	61.0	38.6
MGA_834	LOCUS_08340	sequence01:918573..918770(-)	partial			WP_002656665.1	diadenylate cyclase CdaA	83.1	21.1	72.2
MGA_843	LOCUS_08430	sequence01:926377..926730(+)	frameshift		926374	WP_002656384.1	P13 family porin	100.0	68.7	46.3
MGA_848	LOCUS_08480	sequence02:2070..2648(+)	partial			WP_010890259.1	plasmid maintenance protein	66.1	35.5	33.8
MGA_851	LOCUS_08510	sequence02:7552..8130(-)	partial			WP_010890259.1	plasmid maintenance protein	66.1	35.5	33.8
MGA_861	LOCUS_08610	sequence03:6553..6891(-)	internal_stop_codon	6553..6555(-)		WP_010889839.1	P12 family lipoprotein	100.0	31.9	37.7
MGA_868	LOCUS_08680	sequence03:11174..11464(-)	frameshift,internal_stop_codon	11614..11616(-)	11514,11187,11157	WP_010883738.1	DUF244 domain-containing protein	85.4	18.6	58.5
MGA_874	LOCUS_08740	sequence03:15787..16032(+)	frameshift,internal_stop_codon	16073..16075(+)	15787,16030	WP_010890603.1	ERF family protein	100.0	27.2	52.4
MGA_896	LOCUS_08960	sequence04:7665..7937(-)	partial			WP_010883867.1	DUF276 domain-containing protein	96.7	29.9	63.2
MGA_897	LOCUS_08970	sequence04:8252..8542(-)	frameshift		8257	WP_010257824.1	DUF276 domain-containing protein	99.0	32.6	65.3
MGA_908	LOCUS_09080	sequence04:15109..15408(-)	frameshift		15123	WP_002658723.1	hypothetical protein	98.0	75.2	62.9
MGA_946	LOCUS_09460	sequence05:14131..14472(-)	partial			WP_002658432.1	hypothetical protein	79.6	69.8	61.1
MGA_952	LOCUS_09520	sequence05:17862..18662(-)	partial			WP_010883743.1	DUF228 domain-containing protein	74.4	78.3	41.3
MGA_956	LOCUS_09560	sequence05:21308..21907(-)	partial			WP_162009627.1	Bdr family repetitive protein	74.4	78.2	46.2
MGA_974	LOCUS_09740	sequence06:5897..6319(-)	partial			WP_010883727.1	DUF685 domain-containing protein	97.1	49.8	54.4
MGA_996	LOCUS_09960	sequence06:20496..21053(-)	partial			WP_010883878.1	Bdr family repetitive protein	71.9	73.9	50.7
MGA_1051	LOCUS_10510	sequence08:3083..3490(+)	partial			WP_010883737.1	Bdr family repetitive protein	61.5	37.1	55.3
MGA_1070	LOCUS_10700	sequence08:14959..15300(-)	partial			WP_002658432.1	hypothetical protein	79.6	69.8	61.1
MGA_1075	LOCUS_10750	sequence08:17717..18025(-)	frameshift		18062	WP_010883892.1	DUF228 domain-containing protein	99.0	41.2	41.5
MGA_1076	LOCUS_10760	sequence08:18060..18503(-)	frameshift		18062	WP_010883743.1	DUF228 domain-containing protein	51.7	30.7	48.1
MGA_1084	LOCUS_10840	sequence08:25061..25534(+)	frameshift		25495	WP_010883864.1	site-specific integrase	84.1	50.8	42.9
MGA_1085	LOCUS_10850	sequence08:25497..25802(+)	frameshift		25495	WP_010883761.1	site-specific integrase	100.0	39.1	70.3
MGA_1096	LOCUS_10950	sequence09:5033..5641(-)	partial			WP_161952861.1	apolipoprotein A1/A4/E family protein	57.4	60.5	36.7
MGA_1097	LOCUS_10960	sequence09:5881..9240(-)	partial			WP_055166304.1	tape measure protein	34.4	33.5	22.3
MGA_1120	LOCUS_11190	sequence09:25211..26722(+)	partial			WP_010890288.1	plasmid maintenance protein	65.0	75.2	44.3
MGA_1121	LOCUS_11200	sequence09:26762..27250(+)	partial			WP_010890303.1	hypothetical protein	69.1	82.4	41.1
MGA_1129	LOCUS_11280	sequence10:5349..8708(-)	partial			WP_055166304.1	tape measure protein	34.4	33.5	22.6
MGA_1152	LOCUS_11510	sequence10:24634..26172(+)	partial			WP_010890288.1	plasmid maintenance protein	63.9	75.2	44.3
MGA_1153	LOCUS_11520	sequence10:26188..26679(+)	partial			WP_010890303.1	hypothetical protein	68.7	82.4	45.5
MGA_1155	LOCUS_11540	sequence10:27961..28473(-)	frameshift		27966	WP_012622391.1	hypothetical protein	90.0	60.2	57.5
MGA_1160	LOCUS_11590	sequence11:3095..3451(+)	partial			WP_010883737.1	Bdr family repetitive protein	85.6	45.7	63.1
MGA_1202	LOCUS_12010	sequence12:5122..5733(-)	frameshift		5856,5730	WP_075552700.1	variable large family protein	90.1	58.0	30.1
MGA_1205	LOCUS_12040	sequence12:6298..7137(-)	frameshift,internal_stop_codon	7165..7167(-)	6300	WP_075552700.1	variable large family protein	100.0	83.5	31.0
MGA_1210	LOCUS_12090	sequence12:10570..11103(-)	partial			WP_010883878.1	Bdr family repetitive protein	78.5	73.4	47.5
MGA_1215	LOCUS_12140	sequence12:13364..14053(-)	frameshift		14045	WP_075552700.1	variable large family protein	92.6	63.3	30.3
MGA_1216	LOCUS_12150	sequence12:14043..14405(-)	frameshift		14045	WP_075552700.1	variable large family protein	80.0	26.3	38.4
MGA_1217	LOCUS_12160	sequence12:14631..15371(-)	partial			WP_010883916.1	Bdr family repetitive protein	74.0	81.8	47.6
MGA_1227	LOCUS_12260	sequence12:23489..23740(-)	frameshift		23344,23500	WP_010883917.1	Mlp family lipoprotein	80.7	33.0	50.7
MGA_1229	LOCUS_12280	sequence12:25380..25856(+)	frameshift		25865,25847	WP_075552700.1	variable large family protein	96.2	46.5	37.1
MGA_1230	LOCUS_12290	sequence12:26014..26343(+)	frameshift		25865,25847	WP_075552700.1	variable large family protein	72.5	21.0	38.0
MGA_1240	LOCUS_12390	sequence13:2244..3080(-)	frameshift		3124	WP_075552700.1	variable large family protein	90.3	69.4	27.1
MGA_1243	LOCUS_12420	sequence13:4326..5183(-)	internal_stop_codon	5316..5318(-)		WP_010883836.1	PBSX family phage terminase large subunit	99.6	66.0	57.2
MGA_1244	LOCUS_12430	sequence13:5316..5639(-)	internal_stop_codon	5316..5318(-)		WP_010883813.1	PBSX family phage terminase large subunit	100.0	23.8	52.3
MGA_1246	LOCUS_12450	sequence13:5917..6183(-)	internal_stop_codon	5917..5919(-)		WP_010883742.1	DUF603 domain-containing protein	100.0	47.3	38.9
MGA_1249	LOCUS_12480	sequence13:7890..8396(-)	frameshift		8410	WP_010883784.1	DUF244 domain-containing protein	94.6	36.7	41.4
MGA_1250	LOCUS_12490	sequence13:8402..8860(-)	frameshift		8410	WP_014017770.1	DUF244 domain-containing protein	94.7	32.4	52.8
MGA_1259	LOCUS_12580	sequence13:16026..16535(+)	partial			WP_075552700.1	variable large family protein	92.3	46.3	37.9
MGA_1265	LOCUS_12640	sequence13:20947..21207(+)	frameshift		21195	WP_010890595.1	outer surface protein OspC	98.8	41.9	44.9
MGA_1266	LOCUS_12650	sequence13:21228..21557(+)	frameshift		21195	WP_010890595.1	outer surface protein OspC	85.3	42.9	36.6
MGA_1287	LOCUS_12860	sequence14:2592..3359(+)	partial			WP_010890320.1	plasmid maintenance protein	92.5	70.5	44.9
MGA_1295	LOCUS_12940	sequence14:11533..11946(+)	frameshift		11940,12094	WP_075552700.1	variable large family protein	95.6	35.9	30.0
MGA_1301	LOCUS_13000	sequence14:15634..16341(+)	partial			WP_010890291.1	Bdr family repetitive protein	81.3	66.2	42.4
MGA_1302	LOCUS_13010	sequence14:16569..17312(+)	internal_stop_codon	17310..17312(+)		WP_075552700.1	variable large family protein	93.1	69.7	28.9
MGA_1322	LOCUS_13210	sequence14:34182..35021(+)	frameshift,internal_stop_codon	34152..34154(+)	35018	WP_075552700.1	variable large family protein	100.0	83.5	31.0
MGA_1325	LOCUS_13240	sequence14:35586..36197(+)	frameshift		35588,35462	WP_075552700.1	variable large family protein	90.1	58.0	30.1
MGA_1336	LOCUS_13350	sequence15:4757..5299(-)	frameshift		5282	WP_075552700.1	variable large family protein	90.6	48.4	28.5
MGA_1342	LOCUS_13410	sequence15:10430..10969(-)	frameshift		10537	WP_010890595.1	outer surface protein OspC	80.4	66.2	41.6
MGA_1365	LOCUS_13640	sequence15:29660..30196(-)	frameshift		30185	WP_075552700.1	variable large family protein	89.3	47.1	26.6
MGA_1366	LOCUS_13650	sequence15:30180..30722(-)	frameshift		30185	WP_075552700.1	variable large family protein	93.3	48.9	32.6
MGA_1412	LOCUS_14110	sequence16:36312..36851(+)	frameshift		36743	WP_010890595.1	outer surface protein OspC	80.4	66.2	41.6
MGA_1419	LOCUS_14180	sequence16:44666..45328(+)	frameshift		45301	WP_010889839.1	P12 family lipoprotein	99.1	70.9	31.5
MGA_1438	LOCUS_14370	sequence17:17026..17535(-)	internal_stop_codon	17026..17028(-)		WP_075552700.1	variable large family protein	97.6	47.6	32.2
MGA_1444	LOCUS_14430	sequence17:22547..23443(-)	internal_stop_codon	23576..23578(-)		WP_010883836.1	PBSX family phage terminase large subunit	99.7	66.0	59.6
MGA_1445	LOCUS_14440	sequence17:23576..23899(-)	internal_stop_codon	23576..23578(-)		WP_010883813.1	PBSX family phage terminase large subunit	100.0	23.8	52.3
MGA_1447	LOCUS_14460	sequence17:24177..24443(-)	internal_stop_codon	24177..24179(-)		WP_010883742.1	DUF603 domain-containing protein	100.0	47.3	38.9
MGA_1450	LOCUS_14490	sequence17:26151..26657(-)	frameshift		26671	WP_010883784.1	DUF244 domain-containing protein	94.6	36.7	41.4
MGA_1451	LOCUS_14500	sequence17:26663..27187(-)	frameshift		26671	WP_014017770.1	DUF244 domain-containing protein	94.8	35.8	50.3
MGA_1456	LOCUS_14550	sequence17:30717..31133(+)	frameshift		31046	WP_014017690.1	ERF family protein	89.9	37.8	46.1
MGA_1463	LOCUS_14620	sequence17:37185..37946(+)	internal_stop_codon	37077..37079(+)		WP_075552700.1	variable large family protein	90.5	67.6	30.6
MGA_1481	LOCUS_14800	sequence17:55107..55601(+)	frameshift		55580	WP_025408810.1	FAD-dependent thymidylate synthase	98.2	59.5	77.1
MGA_1482	LOCUS_14810	sequence17:55616..55930(+)	frameshift		55580	WP_025408810.1	FAD-dependent thymidylate synthase	100.0	37.3	79.8
MGA_1501	LOCUS_15000	sequence18:11130..11510(-)	partial			WP_010883769.1	DUF759 family protein	96.8	29.7	40.5
MGA_1502	LOCUS_15010	sequence18:11491..12255(-)	partial			WP_010883894.1	DUF759 family protein	97.2	59.2	49.4
MGA_1515	LOCUS_15140	sequence18:19886..20464(-)	partial			WP_162009627.1	Bdr family repetitive protein	72.9	74.5	47.2
MGA_1525	LOCUS_15240	sequence18:27302..27946(-)	frameshift		27307	WP_010883809.1	DUF244 domain-containing protein	99.5	47.2	51.2
MGA_1530	LOCUS_15290	sequence18:31206..31616(+)	partial			WP_010883737.1	Bdr family repetitive protein	70.6	45.7	53.4
MGA_1599	LOCUS_15980	sequence19:19719..20747(-)	internal_stop_codon	20883..20885(-)		WP_010883851.1	DUF1073 domain-containing protein	99.4	83.8	63.7
MGA_1614	LOCUS_16130	sequence19:32390..32545(+)	partial			WP_010883737.1	Bdr family repetitive protein	92.2	22.4	57.4
MGA_1656	LOCUS_16550	sequence20:3028..3165(+)	frameshift		3153,3335	WP_010258659.1	Bdr family repetitive protein	100.0	20.7	60.9
MGA_1686	LOCUS_16850	sequence20:22131..22493(-)	frameshift		22139	WP_010883878.1	Bdr family repetitive protein	92.5	61.4	46.6
MGA_1687	LOCUS_16860	sequence20:22535..22990(-)	frameshift		23183	WP_010883813.1	PBSX family phage terminase large subunit	100.0	33.6	47.7
MGA_1688	LOCUS_16870	sequence20:23178..23888(-)	frameshift		23186	WP_010883813.1	PBSX family phage terminase large subunit	99.6	52.2	63.0
MGA_1691	LOCUS_16900	sequence20:25961..26305(+)	partial			WP_010883761.1	site-specific integrase	98.2	43.0	68.8
MGA_1693	LOCUS_16920	sequence20:27069..27404(-)	partial			WP_002657080.1	single-stranded DNA-binding protein	98.2	73.2	50.5
MGA_1695	LOCUS_16940	sequence20:28053..28970(-)	frameshift,internal_stop_codon	28017..28019(-),28053..28055(-),27856..27858(-)	27938,27862	WP_010883922.1	DUF244 domain-containing protein	98.0	69.6	48.4
MGA_1697	LOCUS_16960	sequence20:30214..30423(+)	frameshift,internal_stop_codon	30191..30193(+),29960..29962(+),30062..30064(+)	30082	WP_010883909.1	DUF226 domain-containing protein	73.9	28.7	54.9
MGA_1698	LOCUS_16970	sequence20:30545..31312(-)	partial			WP_014017770.1	DUF244 domain-containing protein	96.1	54.1	52.7
MGA_1699	LOCUS_16980	sequence20:31495..31866(+)	frameshift		31875,31839	WP_010890320.1	plasmid maintenance protein	91.9	30.5	67.3
MGA_1700	LOCUS_16990	sequence20:32054..32608(+)	frameshift		31848,31887	WP_010890278.1	plasmid maintenance protein	91.3	47.3	52.0
MGA_1704	LOCUS_17030	sequence20:36127..36369(-)	frameshift		36141	WP_010883803.1	hypothetical protein	87.5	59.8	37.1
MGA_1721	LOCUS_17200	sequence20:46226..46525(-)	frameshift		46240	WP_002658723.1	hypothetical protein	98.0	75.2	62.9
MGA_1727	LOCUS_17260	sequence20:49869..50288(-)	frameshift		49877	WP_010883939.1	DUF228 domain-containing protein	99.3	73.4	67.4
MGA_1730	LOCUS_17290	sequence20:52590..52988(-)	frameshift,internal_stop_codon	52590..52592(-)	52547	WP_162009627.1	Bdr family repetitive protein	90.9	65.3	44.7
MGA_1731	LOCUS_17300	sequence20:53030..54043(-)	frameshift		54068	WP_010883813.1	PBSX family phage terminase large subunit	100.0	74.9	58.8
MGA_1732	LOCUS_17310	sequence20:54048..54383(-)	frameshift		54068	WP_010883888.1	PBSX family phage terminase large subunit	98.2	24.2	53.2
MGA_1734	LOCUS_17330	sequence20:55133..55408(+)	frameshift		55387	WP_010883780.1	Mlp family lipoprotein	74.7	50.7	47.9
MGA_1789	LOCUS_17880	sequence21:36385..36867(-)	frameshift		36399	WP_010883801.1	DUF735 family protein	99.4	79.1	47.8
MGA_1790	LOCUS_17890	sequence21:36883..37395(-)	partial			WP_010883841.1	DUF276 domain-containing protein	100.0	57.9	57.6
MGA_1792	LOCUS_17910	sequence21:37883..38098(-)	frameshift		37915,37806	WP_010890377.1	DUF2634 domain-containing protein	78.9	50.5	58.9
MGA_1833	LOCUS_18320	sequence22:12458..12970(-)	partial			WP_010883878.1	Bdr family repetitive protein	77.6	73.4	46.8
MGA_1835	LOCUS_18340	sequence22:13910..14299(-)	frameshift		13915	WP_075552700.1	variable large family protein	99.2	38.3	33.3
MGA_1844	LOCUS_18430	sequence22:20522..20902(-)	partial			WP_010883752.1	Bdr family repetitive protein	65.1	38.6	45.1
MGA_1858	LOCUS_18570	sequence22:30014..30976(+)	internal_stop_codon	30011..30013(+)		WP_010883784.1	DUF244 domain-containing protein	99.4	71.2	47.5
MGA_1859	LOCUS_18580	sequence22:30973..31248(+)	frameshift		31242	WP_010883760.1	DUF261 domain-containing protein	98.9	63.8	51.1
MGA_1860	LOCUS_18590	sequence22:31690..32211(-)	internal_stop_codon	31690..31692(-)		WP_010883761.1	site-specific integrase	95.4	63.2	53.6
MGA_1864	LOCUS_18630	sequence22:34877..35977(+)	frameshift		34739	WP_010883813.1	PBSX family phage terminase large subunit	99.7	81.1	60.0
MGA_1868	LOCUS_18670	sequence22:39052..39912(+)	partial			WP_162009627.1	Bdr family repetitive protein	73.8	77.3	47.9
MGA_1950	LOCUS_19490	sequence23:60512..61315(+)	partial			WP_010890375.1	S2/P23 family protein	67.8	61.0	29.9