{ "type": "genome", "identifier": "GCF_023051175.1", "organism": "Alcanivorax quisquiliarum", "title": "Alcanivorax quisquiliarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Forestry University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023051175.1", "bioproject": "PRJNA224116", "biosample": "SAMN27413053", "wgs_master": "JALKII000000000.1", "refseq_category": "reference genome", "taxid": "2933565", "species_taxid": "2933565", "organism_name": "Alcanivorax quisquiliarum", "infraspecific_name": "strain=CY1518", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/18", "asm_name": "ASM2305117v1", "asm_submitter": "Beijing Forestry University", "gbrs_paired_asm": "GCA_023051175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/051/175/GCF_023051175.1_ASM2305117v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3242962", "genome_size_ungapped": "3242962", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023051175.1-RS_2024_08_24", "annotation_date": "2024-08-24", "total_gene_count": "2912", "protein_coding_gene_count": "2833", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-18", "dateModified": "2022-04-18", "datePublished": "2022-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Alcanivorax quisquiliarum" ], "sample_taxid": [ "2933565" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "0.908 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3242962", "Number of Sequences": "44", "Longest Sequences (bp)": "682500", "N50 (bp)": "321925", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.9", "Number of CDSs": "2835", "Average Protein Length": "326.7", "Coding Ratio (%)": "85.7", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax pacificus", "strain": "strain=W11-5", "accession": "GCA_000299335.2", "taxid": 1306787, "species_taxid": 1306787, "relation_to_type": "type", "validated": true, "ani": 80.1204, "matched_fragments": 625, 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"below_threshold" }, { "organism_name": "Alcanivorax venustensis", "strain": "strain=ISO4", "accession": "GCA_015356855.1", "taxid": 172371, "species_taxid": 172371, "relation_to_type": "type", "validated": true, "ani": 77.7026, "matched_fragments": 256, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 77.5816, "matched_fragments": 247, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 77.4763, "matched_fragments": 272, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 77.4433, "matched_fragments": 222, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax dieselolei", "strain": "strain=CGMCC 1.3690", "accession": "GCA_014644575.1", "taxid": 285091, "species_taxid": 285091, "relation_to_type": "type", "validated": true, "ani": 77.161, "matched_fragments": 223, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax mobilis", "strain": "strain=MT13131", "accession": "GCA_002864685.1", "taxid": 2019569, "species_taxid": 2019569, "relation_to_type": "type", "validated": true, "ani": 77.1555, "matched_fragments": 254, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 76.4724, "matched_fragments": 149, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas ekonensis", "strain": "strain=COR58", "accession": "GCA_019145435.1", "taxid": 2842353, "species_taxid": 2842353, "relation_to_type": "type", "validated": true, "ani": 76.394, "matched_fragments": 123, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas salipaludis", "strain": "strain=WRN001", "accession": "GCA_002286975.1", "taxid": 2032625, "species_taxid": 2032625, "relation_to_type": "type", "validated": true, "ani": 76.2129, "matched_fragments": 103, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer celer", "strain": "strain=KCTC 12973", "accession": "GCA_020991125.1", "taxid": 435905, "species_taxid": 435905, "relation_to_type": "type", "validated": true, "ani": 76.1707, "matched_fragments": 68, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", "accession": "GCA_000731955.1", "taxid": 1178777, "species_taxid": 1178777, "relation_to_type": "type", "validated": true, "ani": 76.1013, "matched_fragments": 95, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 75.9489, "matched_fragments": 81, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronospirillum operosum", "strain": "strain=G-116", "accession": "GCA_004768465.1", "taxid": 2759953, "species_taxid": 2759953, "relation_to_type": "type", "validated": true, "ani": 75.8302, "matched_fragments": 74, "total_fragments": 1059, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000299335.2", "gtdb_species": "s__Alcanivorax_A pacificus", "ani": 80.1205, "matched_fragments": 625, "total_fragments": 1059, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009846755.1", "gtdb_species": "s__Alcanivorax_A sp009846755", "ani": 80.0201, "matched_fragments": 589, "total_fragments": 1059, "gtdb_taxonomy": 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