{ "type": "genome", "identifier": "GCF_023061285.1", "organism": "Chromohalobacter nigrandesensis", "title": "Chromohalobacter nigrandesensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Technische Universitaet Muenchen", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023061285.1", "bioproject": "PRJNA224116", "biosample": "SAMN22556076", "wgs_master": "JAKGAM000000000.1", "refseq_category": "reference genome", "taxid": "119863", "species_taxid": "119863", "organism_name": "Chromohalobacter nigrandesensis", "infraspecific_name": "strain=DSM 14323", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/19", "asm_name": "ASM2306128v1", "asm_submitter": "Technische Universitaet Muenchen", "gbrs_paired_asm": "GCA_023061285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/061/285/GCF_023061285.1_ASM2306128v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3636986", "genome_size_ungapped": "3636986", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023061285.1-RS_2024_05_08", "annotation_date": "2024-05-08", "total_gene_count": "3439", "protein_coding_gene_count": "3344", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-19", "dateModified": "2022-04-19", "datePublished": "2022-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Chromohalobacter nigrandesensis" ], "sample_taxid": [ "119863" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile: Atacama Saltern" ], "sample_host_location_id": [], "data_size": "1.025 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3636986", "Number of Sequences": "50", "Longest Sequences (bp)": "765660", "N50 (bp)": "237752", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.9", "Number of CDSs": "3335", "Average Protein Length": "321.5", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chromohalobacter nigrandesensis", "strain": "strain=DSM 14323", "accession": "GCA_023061285.1", "taxid": 119863, 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"growth_tmp": 30.0, "optimum_tmp": 32.0, "optimum_ph": 7.0, "genome_size": 3568481.84, "gc_content": 63.9, "coding_genes": 3271.0, "rRNA16S_genes": 5.0, "tRNA_genes": 69.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chromohalobacter", "nigrandesensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }