{ "type": "genome", "identifier": "GCF_023077655.1", "organism": "Halorientalis brevis", "title": "Halorientalis brevis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jiangsu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023077655.1", "bioproject": "PRJNA224116", "biosample": "SAMN27400809", "wgs_master": "JALLGV000000000.1", "refseq_category": "reference genome", "taxid": "1126241", "species_taxid": "1126241", "organism_name": "Halorientalis brevis", "infraspecific_name": "strain=YC89", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/20", "asm_name": "ASM2307765v1", "asm_submitter": "Jiangsu University", "gbrs_paired_asm": "GCA_023077655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/077/655/GCF_023077655.1_ASM2307765v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "4598055", "genome_size_ungapped": "4598055", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023077655.1-RS_2024_05_14", "annotation_date": "2024-05-14", "total_gene_count": "4723", "protein_coding_gene_count": "4618", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-20", "dateModified": "2022-04-20", "datePublished": "2022-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Halorientalis brevis" ], "sample_taxid": [ "1126241" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yuncheng, Shanxi" ], "sample_host_location_id": [], "data_size": "1.269 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 24.62, "strain_heterogeneity": 95.45, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4598055", "Number of Sequences": "15", "Longest Sequences (bp)": "879272", "N50 (bp)": "532002", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "4664", "Average Protein Length": "282.3", "Coding Ratio (%)": "85.9", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halorientalis brevis", "strain": "strain=YC89", "accession": "GCA_023077655.1", "taxid": 1126241, "species_taxid": 1126241, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1448, "total_fragments": 1526, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halorientalis salina", "strain": "strain=NEN8", "accession": "GCA_023566035.1", "taxid": 2932266, "species_taxid": 2932266, "relation_to_type": "type", "validated": true, "ani": 83.7848, "matched_fragments": 854, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis salina", "strain": "strain=NEN8", "accession": "GCA_005049285.1", "taxid": 2932266, "species_taxid": 2932266, "relation_to_type": "type", "validated": true, "ani": 83.7841, "matched_fragments": 854, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis persicus", "strain": "strain=IBRC-M 10043", "accession": "GCA_900110215.1", "taxid": 1367881, "species_taxid": 1367881, "relation_to_type": "type", "validated": true, "ani": 80.423, "matched_fragments": 695, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorientalis 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