{ "type": "genome", "identifier": "GCF_023101345.1", "organism": "Hymenobacter sublimis", "title": "Hymenobacter sublimis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023101345.1", "bioproject": "PRJNA224116", "biosample": "SAMN27488126", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2933777", "species_taxid": "2933777", "organism_name": "Hymenobacter sublimis", "infraspecific_name": "strain=5516 S-25", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/25", "asm_name": "ASM2310134v1", "asm_submitter": "National Institute of Agricultural Sciences", "gbrs_paired_asm": "GCA_023101345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/101/345/GCF_023101345.1_ASM2310134v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4778575", "genome_size_ungapped": "4778575", "gc_percent": "58.500000", "replicon_count": "3", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023101345.1-RS_2024_09_23", "annotation_date": "2024-09-23", "total_gene_count": "4037", "protein_coding_gene_count": "3953", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-25", "dateModified": "2022-04-25", "datePublished": "2022-04-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter sublimis" ], "sample_taxid": [ "2933777" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Gyeonggi-do, Suwon-si" ], "sample_host_location_id": [], "data_size": "1.349 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4778575", "Number of Sequences": "3", "Longest Sequences (bp)": "4610558", "N50 (bp)": "4610558", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.4", "Number of CDSs": "4030", "Average Protein Length": "335.2", "Coding Ratio (%)": "84.8", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter glacieicola", "strain": "strain=CGMCC 1.12990", "accession": "GCA_014640315.1", "taxid": 1562124, "species_taxid": 1562124, "relation_to_type": "type", "validated": true, "ani": 88.1904, "matched_fragments": 1359, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sediminis", "strain": "strain=ELS1360", "accession": "GCA_003231285.1", "taxid": 2218621, "species_taxid": 2218621, "relation_to_type": "type", "validated": true, "ani": 82.7277, "matched_fragments": 1137, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter perfusus", "strain": "strain=LMG 26000", "accession": "GCA_003944765.1", "taxid": 1236770, "species_taxid": 1236770, "relation_to_type": "type", "validated": true, "ani": 81.7661, "matched_fragments": 1036, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rigui", "strain": "strain=KCTC 12533", "accession": "GCA_003944715.1", "taxid": 334424, "species_taxid": 334424, "relation_to_type": "type", "validated": true, "ani": 81.7082, "matched_fragments": 999, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallilatus", "strain": "strain=9PBR-2", "accession": "GCA_003944705.1", "taxid": 2493666, "species_taxid": 2493666, "relation_to_type": "type", "validated": true, "ani": 81.5053, "matched_fragments": 1000, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 81.3855, "matched_fragments": 956, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrotolerans", "strain": "strain=DSM 18569", "accession": "GCA_900142395.1", "taxid": 344998, "species_taxid": 344998, "relation_to_type": "type", "validated": true, "ani": 81.0828, "matched_fragments": 846, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter duratus", "strain": "strain=BT646", "accession": "GCA_014698995.1", "taxid": 2771356, "species_taxid": 2771356, "relation_to_type": "type", "validated": true, "ani": 80.8288, "matched_fragments": 801, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter gelipurpurascens", "strain": "strain=DSM 11116", "accession": "GCA_900187375.1", "taxid": 89968, "species_taxid": 89968, "relation_to_type": "type", "validated": true, "ani": 80.5438, "matched_fragments": 907, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter fodinae", "strain": "strain=92R-1", "accession": "GCA_004745825.1", "taxid": 2510796, "species_taxid": 2510796, "relation_to_type": "type", "validated": true, "ani": 80.509, "matched_fragments": 910, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter wooponensis", "strain": "strain=JCM 19491", "accession": "GCA_004745865.1", "taxid": 1525360, "species_taxid": 1525360, "relation_to_type": "type", "validated": true, "ani": 80.4658, "matched_fragments": 872, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 80.415, "matched_fragments": 841, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter actinosclerus", "strain": "strain=DSM 15310", "accession": "GCA_900111515.1", "taxid": 82805, "species_taxid": 82805, "relation_to_type": "type", "validated": true, "ani": 80.2962, "matched_fragments": 818, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 80.1603, "matched_fragments": 870, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter mucosus", "strain": "strain=DSM 28041", "accession": "GCA_900188255.1", "taxid": 1411120, "species_taxid": 1411120, "relation_to_type": "type", "validated": true, "ani": 80.1338, "matched_fragments": 822, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter chitinivorans", "strain": "strain=DSM 11115", "accession": "GCA_002797555.1", "taxid": 89969, "species_taxid": 89969, "relation_to_type": "type", "validated": true, "ani": 79.9751, "matched_fragments": 886, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 79.8889, "matched_fragments": 855, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014640315.1", "gtdb_species": "s__Hymenobacter glacieicola", "ani": 88.1904, "matched_fragments": 1359, "total_fragments": 1591, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014199535.1", "gtdb_species": "s__Hymenobacter latericoloratus", "ani": 83.9037, "matched_fragments": 1215, "total_fragments": 1591, 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