{ "type": "genome", "identifier": "GCF_023145695.1", "organism": "Vibrio amylolyticus", "title": "Vibrio amylolyticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ocean University of China", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023145695.1", "bioproject": "PRJNA224116", "biosample": "SAMN19664016", "wgs_master": "JAJHVV000000000.1", "refseq_category": "reference genome", "taxid": "2847292", "species_taxid": "2847292", "organism_name": "Vibrio amylolyticus", "infraspecific_name": "strain=ZSDE26", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/27", "asm_name": "ASM2314569v1", "asm_submitter": "Ocean University of China", "gbrs_paired_asm": "GCA_023145695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/145/695/GCF_023145695.1_ASM2314569v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4861024", "genome_size_ungapped": "4861024", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "56", "contig_count": "56", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023145695.1-RS_2024_05_13", "annotation_date": "2024-05-13", "total_gene_count": "4377", "protein_coding_gene_count": "4251", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-27", "dateModified": "2022-04-27", "datePublished": "2022-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio amylolyticus" ], "sample_taxid": [ "2847292" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qingdao" ], "sample_host_location_id": [], "data_size": "1.391 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4861024", "Number of Sequences": "56", "Longest Sequences (bp)": "674882", "N50 (bp)": "358791", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.8", "Number of CDSs": "4275", "Average Protein Length": "326.8", "Coding Ratio (%)": "86.2", "Number of rRNAs": "2", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio coralliirubri", "strain": "strain=DSM 27495", "accession": "GCA_024347375.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 80.3306, "matched_fragments": 428, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio artabrorum", "strain": "strain=CECT 7226", "accession": "GCA_024347295.1", "taxid": 446374, "species_taxid": 446374, "relation_to_type": "type", "validated": true, "ani": 80.298, "matched_fragments": 353, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pomeroyi", "strain": "strain=LMG 20537", "accession": "GCA_024347595.1", "taxid": 198832, "species_taxid": 198832, "relation_to_type": "type", "validated": true, "ani": 80.2318, "matched_fragments": 413, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_024347335.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 80.2281, "matched_fragments": 436, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=Corallo1", "accession": "GCA_002156455.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 80.2247, "matched_fragments": 412, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.2096, "matched_fragments": 385, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio splendidus", "strain": "strain=LMG 19031", "accession": "GCA_024347615.1", "taxid": 29497, "species_taxid": 29497, "relation_to_type": "type", "validated": true, "ani": 80.2054, "matched_fragments": 431, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cyclitrophicus", "strain": "strain=LMG 21359", "accession": "GCA_024347435.1", "taxid": 47951, "species_taxid": 47951, "relation_to_type": "type", "validated": true, "ani": 80.1509, "matched_fragments": 405, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio crassostreae", "strain": "strain=LMG 22240", "accession": "GCA_024347415.1", "taxid": 246167, "species_taxid": 246167, "relation_to_type": "type", "validated": true, "ani": 80.1337, "matched_fragments": 449, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_900089965.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 80.127, "matched_fragments": 425, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio echinoideorum", "strain": "strain=NFH.MB010", "accession": "GCA_004764665.1", "taxid": 2100116, "species_taxid": 2100116, "relation_to_type": "type", "validated": true, "ani": 80.1153, "matched_fragments": 402, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio lentus", "strain": "strain=40M4T", "accession": "GCA_014878155.1", "taxid": 136468, "species_taxid": 136468, "relation_to_type": "type", "validated": true, "ani": 80.1024, "matched_fragments": 432, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio echinoideorum", "strain": "strain=DSM 107264", "accession": "GCA_024347455.1", "taxid": 2100116, "species_taxid": 2100116, "relation_to_type": "type", "validated": true, "ani": 80.1009, "matched_fragments": 411, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 80.0918, "matched_fragments": 376, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_005281815.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0907, "matched_fragments": 383, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio splendidus", "strain": "strain=NCCB 53037", "accession": "GCA_001558015.1", "taxid": 29497, "species_taxid": 29497, "relation_to_type": "type", "validated": true, "ani": 80.0885, "matched_fragments": 418, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LMG 22741", "accession": "GCA_024347515.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 80.0699, "matched_fragments": 425, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio crassostreae", "strain": "strain=LGP7", "accession": "GCA_001048535.1", "taxid": 246167, "species_taxid": 246167, "relation_to_type": "type", "validated": true, "ani": 80.0594, "matched_fragments": 440, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=CCUG 48643", "accession": "GCA_008801295.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0576, "matched_fragments": 389, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=Rd 8.15", "accession": "GCA_002156525.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 80.0392, "matched_fragments": 419, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LGP 13", "accession": "GCA_002156475.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 80.0252, "matched_fragments": 417, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio bathopelagicus", "strain": "strain=Sal10", "accession": "GCA_014879975.1", "taxid": 2777577, "species_taxid": 2777577, "relation_to_type": "type", "validated": true, "ani": 80.0082, "matched_fragments": 430, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=VB 8.9", "accession": "GCA_013416885.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 79.8986, "matched_fragments": 414, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 79.33, "matched_fragments": 334, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 79.1307, "matched_fragments": 319, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio finisterrensis", "strain": "strain=LMG 23869", "accession": "GCA_008933155.1", "taxid": 511998, "species_taxid": 511998, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4649, "matched_fragments": 255, "total_fragments": 1600, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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"ani": 81.6014, "matched_fragments": 603, "total_fragments": 1600, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_013394185.1", "gtdb_species": "s__Vibrio sp013394185", "ani": 80.2388, "matched_fragments": 418, "total_fragments": 1600, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002156455.1", "gtdb_species": "s__Vibrio coralliirubri", "ani": 80.219, "matched_fragments": 412, "total_fragments": 1600, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.2787, "mean_intra_species_ani": "96.55", "min_intra_species_ani": "95.77", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_000272045.2", "gtdb_species": "s__Vibrio crassostreae_C", "ani": 80.1597, "matched_fragments": 432, "total_fragments": 1600, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.007, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_000272105.2", "gtdb_species": "s__Vibrio splendidus_I", "ani": 80.1314, "matched_fragments": 409, "total_fragments": 1600, 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