{ "type": "genome", "identifier": "GCF_023149135.1", "organism": "Fictibacillus marinisediminis", "title": "Fictibacillus marinisediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Incheon National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023149135.1", "bioproject": "PRJNA224116", "biosample": "SAMN21591386", "wgs_master": "JAIWJX000000000.1", "refseq_category": "reference genome", "taxid": "2878389", "species_taxid": "2878389", "organism_name": "Fictibacillus marinisediminis", "infraspecific_name": "strain=KIGAM418", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/27", "asm_name": "ASM2314913v1", "asm_submitter": "Incheon National University", "gbrs_paired_asm": "GCA_023149135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/149/135/GCF_023149135.1_ASM2314913v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4565559", "genome_size_ungapped": "4565559", "gc_percent": "43.000000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023149135.1-RS_2024_03_14", "annotation_date": "2024-03-14", "total_gene_count": "4765", "protein_coding_gene_count": "4536", "non_coding_gene_count": "116", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-27", "dateModified": "2022-04-27", "datePublished": "2022-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Fictibacillus marinisediminis" ], "sample_taxid": [ "2878389" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: East sea" ], "sample_host_location_id": [], "data_size": "1.295 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4565559", "Number of Sequences": "4", "Longest Sequences (bp)": "4354756", "N50 (bp)": "4354756", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.2", "Number of CDSs": "4699", "Average Protein Length": "276.1", "Coding Ratio (%)": "85.3", "Number of rRNAs": "25", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fictibacillus enclensis", "strain": "strain=NIO-1003", "accession": "GCA_900094955.1", "taxid": 1017270, "species_taxid": 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"ani": 79.9378, "matched_fragments": 54, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus macauensis", "strain": "strain=ZFHKF-1", "accession": "GCA_000269865.1", "taxid": 245160, "species_taxid": 245160, "relation_to_type": "type", "validated": true, "ani": 78.814, "matched_fragments": 208, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus flavus", "strain": "strain=KIGAM252", "accession": "GCA_018283675.1", "taxid": 2823519, "species_taxid": 2823519, "relation_to_type": "type", "validated": true, "ani": 78.6717, "matched_fragments": 86, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus rhizophilus", "strain": "strain=FJAT-49825", "accession": "GCA_018343535.1", "taxid": 2833579, "species_taxid": 2833579, "relation_to_type": "type", "validated": true, "ani": 78.4623, "matched_fragments": 62, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus aquaticus", "strain": "strain=GDSW-R2A3", "accession": "GCA_002245695.1", "taxid": 2021314, "species_taxid": 2021314, "relation_to_type": "type", "validated": true, "ani": 77.8203, "matched_fragments": 140, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus halophilus", "strain": "strain=KCTC 33758", "accession": "GCA_016401385.1", "taxid": 1610490, "species_taxid": 1610490, "relation_to_type": "type", "validated": true, "ani": 77.7878, "matched_fragments": 135, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsibacillus pallidus", "strain": "strain=DSM 25281", "accession": "GCA_003350505.1", "taxid": 493781, "species_taxid": 493781, "relation_to_type": "type", "validated": true, "ani": 77.4839, "matched_fragments": 62, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fictibacillus norfolkensis", "strain": "strain=Sa2CUA10", "accession": "GCA_014836645.1", "taxid": 2762233, "species_taxid": 2762233, "relation_to_type": "type", "validated": true, "ani": 77.4813, "matched_fragments": 134, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesobacillus subterraneus", "strain": "strain=DSM 13966", "accession": "GCA_003937825.1", "taxid": 285983, "species_taxid": 285983, "relation_to_type": "suspected-type", "validated": true, "ani": 77.258, "matched_fragments": 53, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus indicus", "strain": "strain=LMG 22858", "accession": "GCA_000708755.2", "taxid": 246786, "species_taxid": 246786, "relation_to_type": "type", "validated": true, "ani": 77.0688, "matched_fragments": 58, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus firmus", "strain": "strain=NBRC 15306", "accession": "GCA_001591465.1", "taxid": 1399, "species_taxid": 1399, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1461, "matched_fragments": 59, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001510655.1", "gtdb_species": "s__Fictibacillus_C sp001510655", "ani": 96.4618, "matched_fragments": 1289, "total_fragments": 1520, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_G;f__Fictibacillaceae;g__Fictibacillus_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.06", "min_intra_species_ani": "97.97", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001457035.1", "gtdb_species": "s__Fictibacillus_C enclensis", 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Fictibacillus", "marinisediminis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }