{ "type": "genome", "identifier": "GCF_023156245.1", "organism": "Marinobacter bryozoorum", "title": "Marinobacter bryozoorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Anhui University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023156245.1", "bioproject": "PRJNA224116", "biosample": "SAMN26317814", "wgs_master": "JAKZAH000000000.1", "refseq_category": "reference genome", "taxid": "256324", "species_taxid": "256324", "organism_name": "Marinobacter bryozoorum", "infraspecific_name": "strain=DSM 15401", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/27", "asm_name": "ASM2315624v1", "asm_submitter": "Anhui University", "gbrs_paired_asm": "GCA_023156245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/156/245/GCF_023156245.1_ASM2315624v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4262190", "genome_size_ungapped": "4261790", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "126", "contig_count": "126", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023156245.1-RS_2024_05_13", "annotation_date": "2024-05-13", "total_gene_count": "3978", "protein_coding_gene_count": "3868", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-27", "dateModified": "2022-04-27", "datePublished": "2022-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter bryozoorum" ], "sample_taxid": [ "256324" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Peter the Great Bay" ], "sample_host_location_id": [], "data_size": "1.210 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4262190", "Number of Sequences": "126", "Longest Sequences (bp)": "257851", "N50 (bp)": "99153", "Gap Ratio (%)": "0.009385", "GCcontent (%)": "59.5", "Number of CDSs": "3934", "Average Protein Length": "319.2", "Coding Ratio (%)": "88.4", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 1361, "total_fragments": 1364, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter segnicrescens", "strain": "strain=CGMCC 1.6489", "accession": "GCA_900111555.1", "taxid": 430453, "species_taxid": 430453, "relation_to_type": "type", "validated": true, "ani": 87.4402, "matched_fragments": 1037, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter zhanjiangensis", "strain": "strain=KCTC 22280", "accession": "GCA_014651935.1", "taxid": 578215, "species_taxid": 578215, "relation_to_type": "type", "validated": true, "ani": 81.5624, "matched_fragments": 758, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter daqiaonensis", "strain": "strain=YCSA40", "accession": "GCA_012070355.1", "taxid": 650891, "species_taxid": 650891, "relation_to_type": "type", "validated": true, "ani": 80.4419, "matched_fragments": 647, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter daqiaonensis", "strain": "strain=CGMCC 1.9167", "accession": "GCA_900115285.1", "taxid": 650891, "species_taxid": 650891, "relation_to_type": "type", "validated": true, "ani": 80.421, "matched_fragments": 656, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 79.8521, "matched_fragments": 410, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter profundi", "strain": "strain=PWS21", "accession": "GCA_002744715.1", "taxid": 2666256, "species_taxid": 2666256, "relation_to_type": "type", "validated": true, "ani": 79.7703, "matched_fragments": 444, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.6975, "matched_fragments": 443, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 79.5136, "matched_fragments": 416, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.3638, "matched_fragments": 402, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 79.1229, "matched_fragments": 391, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter subterrani", "strain": "strain=JG233", "accession": "GCA_001045555.1", "taxid": 1658765, "species_taxid": 1658765, "relation_to_type": "type", "validated": true, "ani": 79.1228, "matched_fragments": 441, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.9188, "matched_fragments": 373, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter santoriniensis", "strain": "strain=NKSG1", "accession": "GCA_000347775.1", "taxid": 523742, "species_taxid": 523742, "relation_to_type": "type", "validated": true, "ani": 78.8239, "matched_fragments": 341, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.7982, "matched_fragments": 405, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 78.5616, "matched_fragments": 405, "total_fragments": 1364, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900111555.1", "gtdb_species": "s__Marinobacter segnicrescens", "ani": 87.4109, "matched_fragments": 1040, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014651935.1", "gtdb_species": "s__Marinobacter zhanjiangensis", "ani": 81.573, "matched_fragments": 756, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115285.1", "gtdb_species": 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"matched_fragments": 445, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.28", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900114925.1", "gtdb_species": "s__Marinobacter pelagius", "ani": 79.686, "matched_fragments": 444, "total_fragments": 1364, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003315345.1", "gtdb_species": "s__Marinobacter pelagius_A", "ani": 79.3948, "matched_fragments": 471, 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