{ "type": "genome", "identifier": "GCF_023156385.1", "organism": "Marinobacter xestospongiae", "title": "Marinobacter xestospongiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Anhui University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023156385.1", "bioproject": "PRJNA224116", "biosample": "SAMN26317882", "wgs_master": "JAKZAK000000000.1", "refseq_category": "na", "taxid": "994319", "species_taxid": "994319", "organism_name": "Marinobacter xestospongiae", "infraspecific_name": "strain=JCM 17469", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/27", "asm_name": "ASM2315638v1", "asm_submitter": "Anhui University", "gbrs_paired_asm": "GCA_023156385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/156/385/GCF_023156385.1_ASM2315638v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4669185", "genome_size_ungapped": "4669185", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "66", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023156385.1-RS_2024_05_13", "annotation_date": "2024-05-13", "total_gene_count": "4292", "protein_coding_gene_count": "4210", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-27", "dateModified": "2022-04-27", "datePublished": "2022-04-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Marinobacter xestospongiae" ], "sample_taxid": [ "994319" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Saudi Arabia: Red Sea coast" ], "sample_host_location_id": [], "data_size": "1.315 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4669185", "Number of Sequences": "66", "Longest Sequences (bp)": "387707", "N50 (bp)": "140831", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.1", "Number of CDSs": "4250", "Average Protein Length": "326.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1525, "total_fragments": 1526, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Marinobacter zhejiangensis", "strain": "strain=CGMCC 1.7061", "accession": "GCA_900114775.1", "taxid": 488535, "species_taxid": 488535, "relation_to_type": "type", "validated": true, "ani": 79.7666, "matched_fragments": 534, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.6913, "matched_fragments": 501, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 79.4233, "matched_fragments": 481, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter profundi", "strain": "strain=PWS21", "accession": "GCA_002744715.1", "taxid": 2666256, "species_taxid": 2666256, "relation_to_type": "type", "validated": true, "ani": 79.4098, "matched_fragments": 542, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 79.3601, "matched_fragments": 467, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter mobilis", "strain": "strain=CGMCC 1.7059", "accession": "GCA_900106945.1", "taxid": 488533, "species_taxid": 488533, "relation_to_type": "type", "validated": true, "ani": 79.3237, "matched_fragments": 545, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter lutaoensis", "strain": "strain=T5054", "accession": "GCA_001981305.1", "taxid": 135739, "species_taxid": 135739, "relation_to_type": "type", "validated": true, "ani": 79.0958, "matched_fragments": 546, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 79.0322, "matched_fragments": 399, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 79.0186, "matched_fragments": 397, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 79.0145, "matched_fragments": 445, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter sediminum", "strain": "strain=R65", "accession": "GCA_016820575.1", "taxid": 256323, "species_taxid": 256323, "relation_to_type": "type", "validated": true, "ani": 78.987, "matched_fragments": 437, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halodurans", "strain": "strain=YJ-S3-2", "accession": "GCA_004327985.1", "taxid": 2528979, "species_taxid": 2528979, "relation_to_type": "type", "validated": true, "ani": 78.9266, "matched_fragments": 478, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 78.848, "matched_fragments": 404, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter adhaerens", "strain": "strain=HP15", "accession": "GCA_000166295.1", "taxid": 1033846, "species_taxid": 1033846, "relation_to_type": "type", "validated": true, "ani": 78.8034, "matched_fragments": 418, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter salinexigens", "strain": "strain=ZYF650", "accession": "GCA_008370345.1", "taxid": 2919747, "species_taxid": 2919747, "relation_to_type": "type", "validated": true, "ani": 78.7558, "matched_fragments": 360, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter shengliensis", "strain": "strain=SL013A34A2", "accession": "GCA_003007715.1", "taxid": 1389223, "species_taxid": 1389223, "relation_to_type": "type", "validated": true, "ani": 78.7404, "matched_fragments": 459, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter santoriniensis", "strain": "strain=NKSG1", "accession": "GCA_000347775.1", "taxid": 523742, "species_taxid": 523742, "relation_to_type": "type", "validated": true, "ani": 78.6647, "matched_fragments": 419, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas cavernae", "strain": "strain=K2W31S-8", "accession": "GCA_003595175.1", "taxid": 2320867, "species_taxid": 2320867, "relation_to_type": "type", "validated": true, "ani": 76.6158, "matched_fragments": 187, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900114775.1", "gtdb_species": "s__Marinobacter zhejiangensis", "ani": 79.7608, "matched_fragments": 534, 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