{
    "type": "genome",
    "identifier": "GCF_023195885.1",
    "organism": "Methylonatrum kenyense",
    "title": "Methylonatrum kenyense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center of Biotechnology RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023195885.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN27753706",
        "wgs_master": "JALPKO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "455253",
        "species_taxid": "455253",
        "organism_name": "Methylonatrum kenyense",
        "infraspecific_name": "strain=AMT 1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/01",
        "asm_name": "ASM2319588v1",
        "asm_submitter": "Research Center of Biotechnology RAS",
        "gbrs_paired_asm": "GCA_023195885.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/195/885/GCF_023195885.1_ASM2319588v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2953873",
        "genome_size_ungapped": "2953873",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023195885.1-RS_2024_05_14",
        "annotation_date": "2024-05-14",
        "total_gene_count": "2735",
        "protein_coding_gene_count": "2663",
        "non_coding_gene_count": "52",
        "pubmed_id": "18048722"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-01",
    "dateModified": "2022-05-01",
    "datePublished": "2022-05-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylonatrum kenyense"
        ],
        "sample_taxid": [
            "455253"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Kenya: Magadi"
        ],
        "sample_host_location_id": [],
        "data_size": "0.824 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2953873",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "470030",
        "N50 (bp)": "274130",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.5",
        "Number of CDSs": "2695",
        "Average Protein Length": "324.4",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methylonatrum kenyense",
                "strain": "strain=AMT 1",
                "accession": "GCA_023195885.1",
                "taxid": 455253,
                "species_taxid": 455253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 972,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aquisalimonas asiatica",
                "strain": "strain=CGMCC 1.6291",
                "accession": "GCA_900110585.1",
                "taxid": 406100,
                "species_taxid": 406100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8841,
                "matched_fragments": 246,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronocella acetinitrilica",
                "strain": "strain=ANL 6-2",
                "accession": "GCA_024170285.1",
                "taxid": 414046,
                "species_taxid": 414046,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6739,
                "matched_fragments": 206,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arhodomonas aquaeolei",
                "strain": "strain=DSM 8974",
                "accession": "GCA_000374645.1",
                "taxid": 2369,
                "species_taxid": 2369,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.436,
                "matched_fragments": 153,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio sulfidiphilus",
                "strain": "strain=HL-EbGR7",
                "accession": "GCA_000021985.1",
                "taxid": 1033854,
                "species_taxid": 1033854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4032,
                "matched_fragments": 145,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter aquaticus",
                "strain": "strain=SP30",
                "accession": "GCA_007625215.1",
                "taxid": 1935996,
                "species_taxid": 1935996,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2186,
                "matched_fragments": 105,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio halophilus",
                "strain": "strain=HL17",
                "accession": "GCA_001995255.1",
                "taxid": 252474,
                "species_taxid": 252474,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1253,
                "matched_fragments": 124,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter curvatus",
                "strain": "strain=UAH-SP71",
                "accession": "GCA_000485905.1",
                "taxid": 1335757,
                "species_taxid": 1335757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1,
                "matched_fragments": 74,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiohalobacter thiocyanaticus",
                "strain": "strain=Hrh1",
                "accession": "GCA_003932505.1",
                "taxid": 585455,
                "species_taxid": 585455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0082,
                "matched_fragments": 135,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sulfurivermis fontis",
                "strain": "strain=JG42",
                "accession": "GCA_004001245.1",
                "taxid": 1972068,
                "species_taxid": 1972068,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9644,
                "matched_fragments": 122,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sulfidoxydans",
                "strain": "strain=MCCC 1A11059",
                "accession": "GCA_017868775.1",
                "taxid": 2733484,
                "species_taxid": 2733484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8036,
                "matched_fragments": 126,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Inmirania thermothiophila",
                "strain": "strain=DSM 100275",
                "accession": "GCA_003751635.1",
                "taxid": 1750597,
                "species_taxid": 1750597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7519,
                "matched_fragments": 117,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalbus denitrificans",
                "strain": "strain=DSM 26407",
                "accession": "GCA_003337735.1",
                "taxid": 547122,
                "species_taxid": 547122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7389,
                "matched_fragments": 143,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frateuria terrea",
                "strain": "strain=CGMCC 1.7053",
                "accession": "GCA_900115705.1",
                "taxid": 529704,
                "species_taxid": 529704,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6141,
                "matched_fragments": 93,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas hydrolytica",
                "strain": "strain=DSWY01",
                "accession": "GCA_021495345.2",
                "taxid": 2493633,
                "species_taxid": 2493633,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5882,
                "matched_fragments": 108,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas carbonaria",
                "strain": "strain=CIP 111764",
                "accession": "GCA_904061905.1",
                "taxid": 2762745,
                "species_taxid": 2762745,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4157,
                "matched_fragments": 122,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas nitrititolerans",
                "strain": "strain=GL14",
                "accession": "GCA_003696285.1",
                "taxid": 2482751,
                "species_taxid": 2482751,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3979,
                "matched_fragments": 100,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinobacterium arenosum",
                "strain": "strain=CAU 1594",
                "accession": "GCA_019795155.1",
                "taxid": 2862496,
                "species_taxid": 2862496,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1264,
                "matched_fragments": 76,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas kunmingensis",
                "strain": "strain=DSM 25974",
                "accession": "GCA_024397575.1",
                "taxid": 1211807,
                "species_taxid": 1211807,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8823,
                "matched_fragments": 76,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas kunmingensis",
                "strain": "strain=DSM 25974",
                "accession": "GCA_900114065.1",
                "taxid": 1211807,
                "species_taxid": 1211807,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6753,
                "matched_fragments": 75,
                "total_fragments": 972,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_007117515.1",
                "gtdb_species": "s__SKGQ01 sp007117515",
                "ani": 82.1254,
                "matched_fragments": 523,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__SKGQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003565775.1",
                "gtdb_species": "s__SKGQ01 sp003565775",
                "ani": 80.3877,
                "matched_fragments": 508,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__SKGQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.57",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_012044895.1",
                "gtdb_species": "s__Aquisalimonas sp012044895",
                "ani": 77.9218,
                "matched_fragments": 227,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__Aquisalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110585.1",
                "gtdb_species": "s__Aquisalimonas asiatica",
                "ani": 77.8841,
                "matched_fragments": 246,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__Aquisalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007130525.1",
                "gtdb_species": "s__SLSJ01 sp007130525",
                "ani": 77.615,
                "matched_fragments": 202,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__SLSJ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.73",
                "min_intra_species_ani": "99.72",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_007125985.1",
                "gtdb_species": "s__LSCE01 sp007125985",
                "ani": 77.5073,
                "matched_fragments": 198,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__LSCE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_007126095.1",
                "gtdb_species": "s__Aquisalimonas sp007126095",
                "ani": 77.4316,
                "matched_fragments": 206,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__Aquisalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.73",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_007127625.1",
                "gtdb_species": "s__Aquisalimonas sp007127625",
                "ani": 77.2777,
                "matched_fragments": 173,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__Aquisalimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.40",
                "min_intra_species_ani": "98.40",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_007134055.1",
                "gtdb_species": "s__SLLM01 sp007134055",
                "ani": 77.2587,
                "matched_fragments": 164,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__SLLM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003564975.1",
                "gtdb_species": "s__SLLM01 sp003564975",
                "ani": 77.1677,
                "matched_fragments": 121,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__Aquisalimonadaceae;g__SLLM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003696305.1",
                "gtdb_species": "s__Pseudomonas_E sp003696305",
                "ani": 76.6221,
                "matched_fragments": 126,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016699715.1",
                "gtdb_species": "s__Competibacter sp016699715",
                "ani": 76.5517,
                "matched_fragments": 82,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Competibacterales;f__Competibacteraceae;g__Competibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002255365.1",
                "gtdb_species": "s__21-64-14 sp002255365",
                "ani": 76.3796,
                "matched_fragments": 62,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__21-64-14;f__21-64-14;g__21-64-14",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003696285.1",
                "gtdb_species": "s__Pseudomonas_A nitrititolerans",
                "ani": 76.3796,
                "matched_fragments": 101,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.45",
                "min_intra_species_ani": "96.83",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 53,
                "status": "-"
            },
            {
                "accession": "GCF_900114065.1",
                "gtdb_species": "s__Pseudomonas_A kunmingensis",
                "ani": 75.716,
                "matched_fragments": 76,
                "total_fragments": 972,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A",
                "ani_circumscription_radius": 97.08,
                "mean_intra_species_ani": "97.31",
                "min_intra_species_ani": "97.18",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.041,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": null,
        "optimum_ph": 10.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methylonatrum",
        "kenyense"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}