{ "type": "genome", "identifier": "GCF_023218175.1", "organism": "Streptomyces lichenis", "title": "Streptomyces lichenis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Burapha University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023218175.1", "bioproject": "PRJNA224116", "biosample": "SAMN27779475", "wgs_master": "JALPTH000000000.1", "refseq_category": "reference genome", "taxid": "2306967", "species_taxid": "2306967", "organism_name": "Streptomyces lichenis", "infraspecific_name": "strain=LCR6-01", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/02", "asm_name": "ASM2321817v1", "asm_submitter": "Burapha University", "gbrs_paired_asm": "GCA_023218175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/218/175/GCF_023218175.1_ASM2321817v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7121629", "genome_size_ungapped": "7121629", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "68", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023218175.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "6258", "protein_coding_gene_count": "6037", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-02", "dateModified": "2022-05-02", "datePublished": "2022-05-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces lichenis" ], "sample_taxid": [ "2306967" ], "sample_host_organism": [ "Dirinaria" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7121629", "Number of Sequences": "68", "Longest Sequences (bp)": "424461", "N50 (bp)": "200115", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.6", "Number of CDSs": "6327", "Average Protein Length": "325.7", "Coding Ratio (%)": "86.8", "Number of rRNAs": "2", "Number of tRNAs": "85", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2341, "total_fragments": 2344, "ani_threshold": 95, 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"Streptomyces cinereoruber", "strain": "strain=JCM4205", "accession": "GCA_019880525.1", "taxid": 67260, "species_taxid": 67260, "relation_to_type": "type", "validated": true, "ani": 83.081, "matched_fragments": 1371, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces roseolilacinus", "strain": "strain=JCM 4335", "accession": "GCA_014649335.1", "taxid": 66904, "species_taxid": 66904, "relation_to_type": "type", "validated": true, "ani": 83.08, "matched_fragments": 1357, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cinereoruber", "strain": "strain=ATCC 19740", "accession": "GCA_009299385.1", "taxid": 67260, "species_taxid": 67260, "relation_to_type": "type", "validated": true, "ani": 83.0686, "matched_fragments": 1397, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fradiae", "strain": "strain=ATCC 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1906, "species_taxid": 1906, "relation_to_type": "suspected-type", "validated": true, "ani": 82.8814, "matched_fragments": 1353, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces termitum", "strain": "strain=JCM 4518", "accession": "GCA_014650175.1", "taxid": 67368, "species_taxid": 67368, "relation_to_type": "type", "validated": true, "ani": 82.8753, "matched_fragments": 1374, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sudanensis", "strain": "strain=SD 504", "accession": "GCA_023614315.1", "taxid": 436397, "species_taxid": 436397, "relation_to_type": "type", "validated": true, "ani": 82.8279, "matched_fragments": 1139, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces zhihengii", "strain": "strain=YIM T102", "accession": "GCA_016919245.1", "taxid": 1818004, "species_taxid": 1818004, "relation_to_type": "type", "validated": true, "ani": 82.5531, "matched_fragments": 1493, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces formicae", "strain": "strain=1H-GS9", "accession": "GCA_022647665.1", "taxid": 1616117, "species_taxid": 1616117, "relation_to_type": "type", "validated": true, "ani": 82.4579, "matched_fragments": 1349, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces genisteinicus", "strain": "strain=CRPJ-33", "accession": "GCA_014489615.1", "taxid": 2768068, "species_taxid": 2768068, "relation_to_type": "type", "validated": true, "ani": 82.4418, "matched_fragments": 1417, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseus", "strain": "strain=DSM 40236", "accession": "GCA_900105705.1", "taxid": 1911, "species_taxid": 1911, "relation_to_type": "type", "validated": true, "ani": 82.339, "matched_fragments": 1434, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseus", "strain": "strain=NCTC13033", "accession": "GCA_900460065.1", "taxid": 1911, "species_taxid": 1911, "relation_to_type": "type", "validated": true, "ani": 82.3246, "matched_fragments": 1405, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces anulatus", "strain": "strain=JCM 4721", "accession": "GCA_014650675.1", "taxid": 1892, "species_taxid": 1892, "relation_to_type": "type", "validated": true, "ani": 82.2104, "matched_fragments": 1414, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 82.0973, "matched_fragments": 1307, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseosporeus", "strain": "strain=JCM 4766", "accession": "GCA_014656055.1", "taxid": 1910, "species_taxid": 1910, "relation_to_type": "type", "validated": true, "ani": 81.7532, "matched_fragments": 1364, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces minutiscleroticus", "strain": "strain=JCM 4790", "accession": "GCA_014650875.1", "taxid": 68238, "species_taxid": 68238, "relation_to_type": "type", "validated": true, "ani": 81.7503, "matched_fragments": 1365, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces eurythermus", "strain": "strain=JCM 4206", "accession": "GCA_014649115.1", "taxid": 42237, "species_taxid": 42237, "relation_to_type": "type", "validated": true, "ani": 81.7202, "matched_fragments": 1376, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces corchorusii", "strain": "strain=DSM 40340", "accession": "GCA_001514055.1", "taxid": 1903, "species_taxid": 1903, "relation_to_type": "type", "validated": true, "ani": 81.7158, "matched_fragments": 1367, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces olivaceoviridis", "strain": "strain=JCM 4499", "accession": "GCA_014650115.1", "taxid": 1921, "species_taxid": 1921, "relation_to_type": "type", "validated": true, "ani": 81.5583, "matched_fragments": 1364, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces canarius", "strain": "strain=JCM 4733", "accession": "GCA_014650735.1", "taxid": 285453, "species_taxid": 285453, "relation_to_type": "type", "validated": true, "ani": 81.5172, "matched_fragments": 1360, "total_fragments": 2344, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"status": "-" }, { "accession": "GCF_001646665.1", "gtdb_species": "s__Streptomyces albulus_A", "ani": 84.252, "matched_fragments": 1530, "total_fragments": 2344, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001905885.1", "gtdb_species": "s__Streptomyces sp001905885", "ani": 84.1388, "matched_fragments": 1510, "total_fragments": 2344, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.05", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { 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