{
    "type": "genome",
    "identifier": "GCF_023227765.1",
    "organism": "Fuchsiella alkaliacetigena",
    "title": "Fuchsiella alkaliacetigena",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Advanced Industrial Science and Technology (AIST)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023227765.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN27488134",
        "wgs_master": "JALKBZ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "957042",
        "species_taxid": "957042",
        "organism_name": "Fuchsiella alkaliacetigena",
        "infraspecific_name": "strain=Z-7100",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/03",
        "asm_name": "ASM2322776v1",
        "asm_submitter": "National Institute of Advanced Industrial Science and Technology (AIST)",
        "gbrs_paired_asm": "GCA_023227765.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/227/765/GCF_023227765.1_ASM2322776v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2873640",
        "genome_size_ungapped": "2873640",
        "gc_percent": "36.000000",
        "replicon_count": "0",
        "scaffold_count": "116",
        "contig_count": "116",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023227765.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "2765",
        "protein_coding_gene_count": "2698",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-03",
    "dateModified": "2022-05-03",
    "datePublished": "2022-05-03",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fuchsiella alkaliacetigena"
        ],
        "sample_taxid": [
            "957042"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: AIST Tsukuba"
        ],
        "sample_host_location_id": [],
        "data_size": "0.803 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2873640",
        "Number of Sequences": "116",
        "Longest Sequences (bp)": "139083",
        "N50 (bp)": "51077",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.2",
        "Number of CDSs": "2709",
        "Average Protein Length": "307.1",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Fuchsiella alkaliacetigena",
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                "accession": "GCA_023227765.1",
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                "species_taxid": 957042,
                "relation_to_type": "type",
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                "matched_fragments": 895,
                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Natroniella sulfidigena",
                "strain": "strain=AHT3",
                "accession": "GCA_023223645.1",
                "taxid": 723921,
                "species_taxid": 723921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2276,
                "matched_fragments": 61,
                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Selenihalanaerobacter shriftii",
                "strain": "strain=ATCC BAA-73",
                "accession": "GCA_900167185.1",
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                "species_taxid": 142842,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6063,
                "matched_fragments": 117,
                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natroniella acetigena",
                "strain": "strain=Z-7937",
                "accession": "GCA_023227745.1",
                "taxid": 52004,
                "species_taxid": 52004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5352,
                "matched_fragments": 69,
                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Orenia marismortui",
                "strain": "strain=DSM 5156",
                "accession": "GCA_000379025.1",
                "taxid": 46469,
                "species_taxid": 46469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8401,
                "matched_fragments": 53,
                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halanaerobacter jeridensis",
                "strain": "strain=DSM 23230",
                "accession": "GCA_016908315.1",
                "taxid": 706427,
                "species_taxid": 706427,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2625,
                "matched_fragments": 54,
                "total_fragments": 900,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900167185.1",
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                "matched_fragments": 117,
                "total_fragments": 900,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Acetohalobiaceae;g__Selenihalanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900114655.1",
                "gtdb_species": "s__Frackibacter sp900114655",
                "ani": 76.571,
                "matched_fragments": 124,
                "total_fragments": 900,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Acetohalobiaceae;g__Frackibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.43",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_016908635.1",
                "gtdb_species": "s__Sporohalobacter salinus",
                "ani": 76.3553,
                "matched_fragments": 96,
                "total_fragments": 900,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Acetohalobiaceae;g__Sporohalobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000144695.1",
                "gtdb_species": "s__Acetohalobium arabaticum",
                "ani": 76.2146,
                "matched_fragments": 102,
                "total_fragments": 900,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Acetohalobiaceae;g__Acetohalobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000379025.1",
                "gtdb_species": "s__Orenia marismortui",
                "ani": 75.8671,
                "matched_fragments": 52,
                "total_fragments": 900,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Halobacteroidaceae;g__Orenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
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                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016908315.1",
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                "ani": 75.2503,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_F;c__Halanaerobiia;o__Halobacteroidales;f__Halobacteroidaceae;g__Halanaerobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.456,
        "cell_length": 1.301,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 40.0,
        "optimum_ph": 9.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Fuchsiella",
        "alkaliacetigena"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}