{
    "type": "genome",
    "identifier": "GCF_023277905.1",
    "organism": "Bacteroides caecimuris",
    "title": "Bacteroides caecimuris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut Pasteur",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023277905.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN27755657",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "1796613",
        "species_taxid": "1796613",
        "organism_name": "Bacteroides caecimuris",
        "infraspecific_name": "strain=I48",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/09",
        "asm_name": "ASM2327790v1",
        "asm_submitter": "Institut Pasteur",
        "gbrs_paired_asm": "GCA_023277905.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/277/905/GCF_023277905.1_ASM2327790v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4802316",
        "genome_size_ungapped": "4800416",
        "gc_percent": "42.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023277905.1-RS_2025_01_08",
        "annotation_date": "2025-01-08",
        "total_gene_count": "4041",
        "protein_coding_gene_count": "3772",
        "non_coding_gene_count": "79",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-09",
    "dateModified": "2022-05-09",
    "datePublished": "2022-05-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroides caecimuris"
        ],
        "sample_taxid": [
            "1796613"
        ],
        "sample_host_organism": [
            "Mus musculus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: paris"
        ],
        "sample_host_location_id": [],
        "data_size": "1.361 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
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        "Total Sequence Length (bp)": "4802316",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4802316",
        "N50 (bp)": "4802316",
        "Gap Ratio (%)": "0.039606",
        "GCcontent (%)": "42.6",
        "Number of CDSs": "3893",
        "Average Protein Length": "359.7",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "12",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Bacteroides caecimuris",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            {
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                "accession": "GCA_016697125.1",
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                "validated": true,
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            },
            {
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                "accession": "GCA_002221665.1",
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            {
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
                "strain": "strain=FDAARGOS_1516",
                "accession": "GCA_020149745.1",
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                "species_taxid": 28116,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Bacteroides ovatus",
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            },
            {
                "organism_name": "Bacteroides caccae",
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            {
                "organism_name": "Bacteroides thetaiotaomicron",
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        ],
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                "accession": "GCF_001688725.2",
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            },
            {
                "accession": "GCF_000210075.1",
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                "accession": "GCA_000613385.1",
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}