{ "type": "genome", "identifier": "GCF_023282985.1", "organism": "Serratia silvae", "title": "Serratia silvae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University Reims Champagne Ardennes UMR FARE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023282985.1", "bioproject": "PRJNA224116", "biosample": "SAMN18679460", "wgs_master": "JAGQDC000000000.1", "refseq_category": "reference genome", "taxid": "2824122", "species_taxid": "2824122", "organism_name": "Serratia silvae", "infraspecific_name": "strain=Arafor3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/09", "asm_name": "ASM2328298v1", "asm_submitter": "University Reims Champagne Ardennes UMR FARE", "gbrs_paired_asm": "GCA_023282985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/282/985/GCF_023282985.1_ASM2328298v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4909756", "genome_size_ungapped": "4909560", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "98", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023282985.1-RS_2024_09_24", "annotation_date": "2024-09-24", "total_gene_count": "4705", "protein_coding_gene_count": "4478", "non_coding_gene_count": "83", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-09", "dateModified": "2022-05-09", "datePublished": "2022-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Serratia silvae" ], "sample_taxid": [ "2824122" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France:Champenoux" ], "sample_host_location_id": [], "data_size": "1.401 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4909756", "Number of Sequences": "98", "Longest Sequences (bp)": "469332", "N50 (bp)": "199059", "Gap Ratio (%)": "0.003992", "GCcontent (%)": "53.5", "Number of CDSs": "4535", "Average Protein Length": "311.8", "Coding Ratio (%)": "86.4", "Number of rRNAs": "1", "Number of tRNAs": "71", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Serratia fonticola", "strain": "strain=DSM 4576", "accession": "GCA_001006005.1", "taxid": 47917, "species_taxid": 47917, "relation_to_type": "suspected-type", "validated": true, "ani": 93.9678, "matched_fragments": 1387, "total_fragments": 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"organism_name": "Serratia plymuthica", "strain": "strain=FDAARGOS_895", "accession": "GCA_016027675.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 82.5911, "matched_fragments": 976, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia plymuthica", "strain": "strain=NBRC 102599", "accession": "GCA_001590925.1", "taxid": 82996, "species_taxid": 82996, "relation_to_type": "type", "validated": true, "ani": 82.4978, "matched_fragments": 942, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia ficaria", "strain": "strain=NCTC12148", "accession": "GCA_900187015.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 82.4708, "matched_fragments": 976, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia ficaria", "strain": "strain=NBRC 102596", "accession": "GCA_001590885.1", "taxid": 61651, "species_taxid": 61651, "relation_to_type": "type", "validated": true, "ani": 82.4677, "matched_fragments": 949, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia liquefaciens", "strain": "strain=ATCC 27592", "accession": "GCA_000422085.1", "taxid": 614, "species_taxid": 614, "relation_to_type": "type", "validated": true, "ani": 82.4392, "matched_fragments": 967, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 82.4363, "matched_fragments": 941, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia marcescens", "strain": "strain=ATCC 13880", "accession": "GCA_017654245.1", "taxid": 615, "species_taxid": 615, 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Sm_S65_jyu2015", "accession": "GCA_017298975.1", "taxid": 615, "species_taxid": 615, "relation_to_type": "suspected-type", "validated": true, "ani": 82.2543, "matched_fragments": 968, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 82.1731, "matched_fragments": 930, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia grimesii", "strain": "strain=NCTC11543", "accession": "GCA_900456935.1", "taxid": 82995, "species_taxid": 82995, "relation_to_type": "type", "validated": true, "ani": 81.9224, "matched_fragments": 886, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia grimesii", "strain": "strain=NBRC 13537", "accession": "GCA_001590905.1", "taxid": 82995, 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