{ "type": "genome", "identifier": "GCF_023283485.1", "organism": "Shewanella glacialipiscicola", "title": "Shewanella glacialipiscicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Karolinska Institutet", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023283485.1", "bioproject": "PRJNA224116", "biosample": "SAMN24537895", "wgs_master": "JAKILU000000000.1", "refseq_category": "reference genome", "taxid": "614069", "species_taxid": "614069", "organism_name": "Shewanella glacialipiscicola", "infraspecific_name": "strain=LMG 23744", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/09", "asm_name": "ASM2328348v1", "asm_submitter": "Karolinska Institutet", "gbrs_paired_asm": "GCA_023283485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/283/485/GCF_023283485.1_ASM2328348v1", 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"below_threshold" }, { "organism_name": "Shewanella oncorhynchi", "strain": "strain=S-1", "accession": "GCA_012584455.1", "taxid": 2726434, "species_taxid": 2726434, "relation_to_type": "type", "validated": true, "ani": 85.3057, "matched_fragments": 1082, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella hafniensis", "strain": "strain=ATCC BAA-1207", "accession": "GCA_019655335.1", "taxid": 365590, "species_taxid": 365590, "relation_to_type": "type", "validated": true, "ani": 85.2885, "matched_fragments": 1055, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella profunda", "strain": "strain=DSM 15900", "accession": "GCA_023283765.1", "taxid": 254793, "species_taxid": 254793, "relation_to_type": "type", "validated": true, "ani": 82.8008, "matched_fragments": 914, "total_fragments": 1348, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella 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95.0, "mean_intra_species_ani": "97.37", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_002966515.1", "gtdb_species": "s__Shewanella sp002966515", "ani": 85.2372, "matched_fragments": 1119, "total_fragments": 1348, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.53", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_002783505.1", "gtdb_species": "s__Shewanella sp002783505", "ani": 82.5469, "matched_fragments": 872, "total_fragments": 1348, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, 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"N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.041, "doubling_h": 0.077, "growth_tmp": 25.0, "optimum_tmp": 25.0, "optimum_ph": 7.147, "genome_size": 4868941.65, "gc_content": 46.142, "coding_genes": 4161.776, "rRNA16S_genes": 9.437, "tRNA_genes": 107.731, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.812, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.187, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Shewanella", "glacialipiscicola" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }