{
    "type": "genome",
    "identifier": "GCF_023283865.1",
    "organism": "Shewanella psychromarinicola",
    "title": "Shewanella psychromarinicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Karolinska Institutet",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023283865.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN24537873",
        "wgs_master": "JAKIKZ000000000.1",
        "refseq_category": "na",
        "taxid": "2487742",
        "species_taxid": "2487742",
        "organism_name": "Shewanella psychromarinicola",
        "infraspecific_name": "strain=JCM 32090",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/09",
        "asm_name": "ASM2328386v1",
        "asm_submitter": "Karolinska Institutet",
        "gbrs_paired_asm": "GCA_023283865.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/283/865/GCF_023283865.1_ASM2328386v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4983102",
        "genome_size_ungapped": "4983102",
        "gc_percent": "42.000000",
        "replicon_count": "0",
        "scaffold_count": "165",
        "contig_count": "165",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023283865.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "4389",
        "protein_coding_gene_count": "4148",
        "non_coding_gene_count": "103",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-09",
    "dateModified": "2022-05-09",
    "datePublished": "2022-05-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shewanella psychromarinicola"
        ],
        "sample_taxid": [
            "2487742"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica: Ross Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.423 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4983102",
        "Number of Sequences": "165",
        "Longest Sequences (bp)": "215129",
        "N50 (bp)": "75249",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.1",
        "Number of CDSs": "4232",
        "Average Protein Length": "318.9",
        "Coding Ratio (%)": "81.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "87",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Shewanella psychromarinicola",
                "strain": "strain=JCM 32090",
                "accession": "GCA_023283865.1",
                "taxid": 2487742,
                "species_taxid": 2487742,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1576,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Shewanella psychromarinicola",
                "strain": "strain=M2",
                "accession": "GCA_003855155.1",
                "taxid": 2487742,
                "species_taxid": 2487742,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9985,
                "matched_fragments": 1582,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Shewanella livingstonensis",
                "strain": "strain=LMG 19866",
                "accession": "GCA_003855395.1",
                "taxid": 150120,
                "species_taxid": 150120,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3735,
                "matched_fragments": 1186,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella vesiculosa",
                "strain": "strain=M7",
                "accession": "GCA_021560015.1",
                "taxid": 518738,
                "species_taxid": 518738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4565,
                "matched_fragments": 1150,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella vesiculosa",
                "strain": "strain=LMG 24424",
                "accession": "GCA_003797885.1",
                "taxid": 518738,
                "species_taxid": 518738,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.434,
                "matched_fragments": 1146,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella polaris",
                "strain": "strain=SM1901",
                "accession": "GCA_006385555.1",
                "taxid": 2588449,
                "species_taxid": 2588449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8454,
                "matched_fragments": 1134,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella saliphila",
                "strain": "strain=KCTC 62131",
                "accession": "GCA_023283695.1",
                "taxid": 2282698,
                "species_taxid": 2282698,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9171,
                "matched_fragments": 831,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella inventionis",
                "strain": "strain=KCTC 42807",
                "accession": "GCA_023283595.1",
                "taxid": 1738770,
                "species_taxid": 1738770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6451,
                "matched_fragments": 784,
                "total_fragments": 1585,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003855155.1",
                "gtdb_species": "s__Shewanella sp002836275",
                "ani": 99.9985,
                "matched_fragments": 1582,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.14",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_010092445.1",
                "gtdb_species": "s__Shewanella sp002836315",
                "ani": 85.9907,
                "matched_fragments": 1199,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.34",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003797125.1",
                "gtdb_species": "s__Shewanella frigidimarina",
                "ani": 85.8098,
                "matched_fragments": 1193,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.50",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_014164505.1",
                "gtdb_species": "s__Shewanella sp014164505",
                "ani": 85.5186,
                "matched_fragments": 945,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003855395.1",
                "gtdb_species": "s__Shewanella livingstonensis",
                "ani": 85.3682,
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                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003797885.1",
                "gtdb_species": "s__Shewanella vesiculosa",
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                "matched_fragments": 1146,
                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_006385555.1",
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                "total_fragments": 1585,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.227,
        "cell_length": 0.265,
        "doubling_h": 0.077,
        "growth_tmp": 22.402,
        "optimum_tmp": 22.248,
        "optimum_ph": 7.147,
        "genome_size": 4868941.65,
        "gc_content": 46.142,
        "coding_genes": 4161.776,
        "rRNA16S_genes": 9.437,
        "tRNA_genes": 107.731,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.333,
        "facultative_respiration": 0.565,
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        "aerobic_respiration": 0.413,
        "mesophilic_range_tmp": 0.812,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.187,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Shewanella",
        "psychromarinicola"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}