{ "type": "genome", "identifier": "GCF_023284065.1", "organism": "Shewanella gaetbuli", "title": "Shewanella gaetbuli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Karolinska Institutet", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023284065.1", "bioproject": "PRJNA224116", "biosample": "SAMN24537863", "wgs_master": "JAKIKP000000000.1", "refseq_category": "reference genome", "taxid": "220752", "species_taxid": "220752", "organism_name": "Shewanella gaetbuli", "infraspecific_name": "strain=DSM 16422", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/09", "asm_name": "ASM2328406v1", "asm_submitter": "Karolinska Institutet", "gbrs_paired_asm": "GCA_023284065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/284/065/GCF_023284065.1_ASM2328406v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4038747", "genome_size_ungapped": "4038747", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023284065.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3451", "protein_coding_gene_count": "3331", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-09", "dateModified": "2022-05-09", "datePublished": "2022-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella gaetbuli" ], "sample_taxid": [ "220752" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Mokpo" ], 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"Shewanella litoralis", "strain": "strain=JCM 32306", "accession": "GCA_009828585.1", "taxid": 2282700, "species_taxid": 2282700, "relation_to_type": "type", "validated": true, "ani": 79.2548, "matched_fragments": 416, "total_fragments": 1334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=JCM 32304", "accession": "GCA_014648295.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 79.2484, "matched_fragments": 431, "total_fragments": 1334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella ulleungensis", "strain": "strain=JCM 32305", "accession": "GCA_014648315.1", "taxid": 2282699, "species_taxid": 2282699, "relation_to_type": "type", "validated": true, "ani": 79.238, "matched_fragments": 416, "total_fragments": 1334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 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"matched_fragments": 361, "total_fragments": 1334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella xiamenensis", "strain": "strain=JCM 16212", "accession": "GCA_014647135.1", "taxid": 332186, "species_taxid": 332186, "relation_to_type": "type", "validated": true, "ani": 78.4345, "matched_fragments": 234, "total_fragments": 1334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella baltica", "strain": "strain=NCTC10735", "accession": "GCA_900456975.1", "taxid": 62322, "species_taxid": 62322, "relation_to_type": "type", "validated": true, "ani": 78.3155, "matched_fragments": 238, "total_fragments": 1334, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Parashewanella curva", "strain": "strain=C51", "accession": "GCA_003675895.1", "taxid": 2338552, "species_taxid": 2338552, "relation_to_type": "type", "validated": true, "ani": 77.9368, "matched_fragments": 146, "total_fragments": 1334, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011765625.1", "gtdb_species": "s__Shewanella aestuarii_A", "ani": 80.1714, "matched_fragments": 578, "total_fragments": 1334, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014647215.1", "gtdb_species": "s__Shewanella aestuarii", "ani": 80.0927, "matched_fragments": 582, "total_fragments": 1334, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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