{ "type": "genome", "identifier": "GCF_023333585.1", "organism": "Argonema antarcticum A004/B2", "title": "Argonema antarcticum A004/B2", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Palacky University Olomouc", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023333585.1", "bioproject": "PRJNA224116", "biosample": "SAMN21250283", "wgs_master": "JAIQZN000000000.1", "refseq_category": "reference genome", "taxid": "2875782", "species_taxid": "2942763", "organism_name": "Argonema antarcticum A004/B2", "infraspecific_name": "strain=A004/B2", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/11", "asm_name": "ASM2333358v1", "asm_submitter": "Palacky University Olomouc", "gbrs_paired_asm": "GCA_023333585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/333/585/GCF_023333585.1_ASM2333358v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7745032", "genome_size_ungapped": "7740664", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "249", "contig_count": "249", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023333585.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "7176", "protein_coding_gene_count": "6960", "non_coding_gene_count": "82", "pubmed_id": "35504986" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-11", "dateModified": "2022-05-11", "datePublished": "2022-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Argonema antarcticum A004/B2" ], "sample_taxid": [ "2875782" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica" ], "sample_host_location_id": [], "data_size": "2.207 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7745032", "Number of Sequences": "249", "Longest Sequences (bp)": "228252", "N50 (bp)": "66484", "Gap Ratio (%)": "0.056397", "GCcontent (%)": "44.5", "Number of CDSs": "6670", "Average Protein Length": "315.6", "Coding Ratio (%)": "81.5", "Number of rRNAs": "2", "Number of tRNAs": "75", "Number of CRISPRs": "12" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Argonema antarcticum", "strain": "strain=A004/B2", "accession": "GCA_023333585.1", "taxid": 2942763, "species_taxid": 2942763, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2442, "total_fragments": 2453, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Argonema galeatum", "strain": "strain=A003/A1", "accession": "GCA_023333595.1", "taxid": 2942762, "species_taxid": 2942762, "relation_to_type": "type", "validated": true, "ani": 93.1736, "matched_fragments": 1807, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Allocoleopsis franciscana", "strain": "strain=PCC 7113", "accession": "GCA_000317515.1", "taxid": 2886352, "species_taxid": 2886352, "relation_to_type": "type", "validated": true, "ani": 76.3016, "matched_fragments": 204, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brasilonema sennae", "strain": "strain=CENA114", "accession": "GCA_006968745.1", "taxid": 1397703, "species_taxid": 1397703, "relation_to_type": "type", "validated": true, "ani": 76.0681, "matched_fragments": 155, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brasilonema bromeliae", "strain": "strain=SPC951", "accession": "GCA_012912135.1", "taxid": 383615, "species_taxid": 383615, "relation_to_type": "type", "validated": true, "ani": 75.9435, "matched_fragments": 124, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc punctiforme", "strain": "strain=ATCC 29133; PCC 73102", "accession": "GCA_000020025.1", "taxid": 272131, "species_taxid": 272131, "relation_to_type": "type", "validated": true, "ani": 75.9396, "matched_fragments": 178, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nostoc favosum", "strain": "strain=CHAB 5714", "accession": "GCA_020829495.1", "taxid": 2907819, "species_taxid": 2907819, "relation_to_type": "type", "validated": true, "ani": 75.9043, "matched_fragments": 195, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Iningainema tapete", "strain": "strain=BLCC-T55", "accession": "GCA_014698965.1", "taxid": 2806730, "species_taxid": 2806730, "relation_to_type": "type", "validated": true, "ani": 75.838, "matched_fragments": 159, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliterella atlantica", "strain": "strain=CENA595", "accession": "GCA_000952155.1", "taxid": 1827278, "species_taxid": 1827278, "relation_to_type": "type", "validated": true, "ani": 75.8174, "matched_fragments": 115, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Okeania hirsuta", "strain": "strain=PAB10Feb10-1", "accession": "GCA_003838195.1", "taxid": 1458930, "species_taxid": 1458930, "relation_to_type": "type", "validated": true, "ani": 75.0612, "matched_fragments": 75, "total_fragments": 2453, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014696265.1", "gtdb_species": "s__FACHB-1375 sp014696265", "ani": 81.0738, "matched_fragments": 1424, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Phormidiaceae_A;g__FACHB-1375", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001904725.1", "gtdb_species": "s__Phormidium_B ambiguum", "ani": 77.8394, "matched_fragments": 415, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Phormidiaceae_A;g__Phormidium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003486305.1", "gtdb_species": "s__UBA11371 sp003486305", "ani": 77.2811, "matched_fragments": 474, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Phormidiaceae_A;g__UBA11371", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014695585.1", "gtdb_species": "s__FACHB-831 sp014695585", "ani": 76.7461, "matched_fragments": 321, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__FACHB-T130;g__FACHB-831", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014695375.1", "gtdb_species": "s__FACHB-T130 sp014695375", "ani": 76.5664, "matched_fragments": 309, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__FACHB-T130;g__FACHB-T130", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.57", "min_intra_species_ani": "97.52", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_014695915.1", "gtdb_species": "s__FACHB-40 sp014695915", "ani": 76.5045, "matched_fragments": 317, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__FACHB-T130;g__FACHB-40", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.30", "min_intra_species_ani": "95.91", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_014698845.1", "gtdb_species": "s__FACHB-T130 sp014698845", "ani": 76.498, "matched_fragments": 304, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__FACHB-T130;g__FACHB-T130", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003443655.1", "gtdb_species": "s__Nostoc sphaeroides", "ani": 76.155, "matched_fragments": 189, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015207285.1", "gtdb_species": "s__Microcoleus sp015207285", "ani": 76.1449, "matched_fragments": 223, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015206945.1", "gtdb_species": "s__Nostoc sp015206945", "ani": 76.1196, "matched_fragments": 203, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014695715.1", "gtdb_species": "s__FACHB-68 sp014695715", "ani": 76.1195, "matched_fragments": 204, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Oscillatoriaceae_A;g__FACHB-68", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000332335.1", "gtdb_species": "s__PCC-10802 sp000332335", "ani": 76.0151, "matched_fragments": 205, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Oscillatoriaceae_A;g__PCC-10802", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001712795.1", "gtdb_species": "s__Nostoc sp001712795", "ani": 76.0041, "matched_fragments": 222, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014698115.1", "gtdb_species": "s__Nostoc sp014698115", "ani": 75.9881, "matched_fragments": 205, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002246015.1", "gtdb_species": "s__Nostoc sp002246015", "ani": 75.9612, "matched_fragments": 196, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000020025.1", "gtdb_species": "s__Nostoc punctiforme", "ani": 75.9597, "matched_fragments": 175, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017114985.1", "gtdb_species": "s__Nostoc sp017114985", "ani": 75.9561, "matched_fragments": 187, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016056275.1", "gtdb_species": "s__Dendronalium phyllosphericum", "ani": 75.936, "matched_fragments": 214, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Dendronalium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014698505.1", "gtdb_species": "s__Nostoc foliaceum_A", "ani": 75.9334, "matched_fragments": 172, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.20", "min_intra_species_ani": "96.44", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002813575.1", "gtdb_species": "s__Nostoc flagelliforme_A", "ani": 75.8802, "matched_fragments": 214, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Nostoc", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001586785.1", "gtdb_species": "s__Sphaerospermopsis_A aphanizomenoides_A", "ani": 75.8486, "matched_fragments": 122, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Sphaerospermopsis_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014697625.1", "gtdb_species": "s__Trichormus azotica", "ani": 75.7501, "matched_fragments": 125, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Trichormus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014697105.1", "gtdb_species": "s__Trichormus subtropica", "ani": 75.6466, "matched_fragments": 130, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Nostocaceae;g__Trichormus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001890975.1", "gtdb_species": "s__Roseofilum reptotaenium_A", "ani": 75.5503, "matched_fragments": 70, "total_fragments": 2453, "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Desertifilaceae;g__Roseofilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Argonema", "antarcticum", "A004/B2" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }