{
    "type": "genome",
    "identifier": "GCF_023371205.1",
    "organism": "Parvivirga hydrogeniphila",
    "title": "Parvivirga hydrogeniphila",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Center of Biotechnology RAS",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023371205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN27596938",
        "wgs_master": "JAMCCO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2939460",
        "species_taxid": "2939460",
        "organism_name": "Parvivirga hydrogeniphila",
        "infraspecific_name": "strain=Es71-Z0120",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/15",
        "asm_name": "ASM2337120v1",
        "asm_submitter": "Research Center of Biotechnology RAS",
        "gbrs_paired_asm": "GCA_023371205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/371/205/GCF_023371205.1_ASM2337120v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1840996",
        "genome_size_ungapped": "1840996",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023371205.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "1816",
        "protein_coding_gene_count": "1740",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-15",
    "dateModified": "2022-05-15",
    "datePublished": "2022-05-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parvivirga hydrogeniphila"
        ],
        "sample_taxid": [
            "2939460"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Russia: Yessentuki"
        ],
        "sample_host_location_id": [],
        "data_size": "0.499 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1840996",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "1128135",
        "N50 (bp)": "1128135",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.6",
        "Number of CDSs": "1757",
        "Average Protein Length": "324.7",
        "Coding Ratio (%)": "93.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gordonibacter urolithinfaciens",
                "strain": "strain=DSM 27213T",
                "accession": "GCA_900199375.1",
                "taxid": 1335613,
                "species_taxid": 1335613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5858,
                "matched_fragments": 63,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonibacter urolithinfaciens",
                "strain": "strain=DSM 27213",
                "accession": "GCA_003788975.1",
                "taxid": 1335613,
                "species_taxid": 1335613,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4641,
                "matched_fragments": 64,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=DSM 2243",
                "accession": "GCA_000024265.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4515,
                "matched_fragments": 67,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonibacter pamelaeae",
                "strain": "strain=7-10-1-bT",
                "accession": "GCA_000210055.1",
                "taxid": 471189,
                "species_taxid": 471189,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3774,
                "matched_fragments": 68,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermophilibacter mediterraneus",
                "strain": "strain=Marseille-P3256",
                "accession": "GCA_900119385.1",
                "taxid": 1871031,
                "species_taxid": 1871031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3761,
                "matched_fragments": 56,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=ATCC 25559",
                "accession": "GCA_003340105.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3741,
                "matched_fragments": 62,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella lenta",
                "strain": "strain=UCSF2243",
                "accession": "GCA_003339945.1",
                "taxid": 84112,
                "species_taxid": 84112,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3346,
                "matched_fragments": 62,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermophilibacter provencensis",
                "strain": "strain=Marseille-P2912",
                "accession": "GCA_900128445.1",
                "taxid": 1852386,
                "species_taxid": 1852386,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2741,
                "matched_fragments": 60,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enorma timonensis",
                "strain": "strain=GD5",
                "accession": "GCA_000321165.1",
                "taxid": 1232436,
                "species_taxid": 1232436,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2618,
                "matched_fragments": 55,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella sinensis",
                "strain": "strain=DSM 16107",
                "accession": "GCA_003339815.1",
                "taxid": 242230,
                "species_taxid": 242230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2584,
                "matched_fragments": 65,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eggerthella sinensis",
                "strain": "strain=DSM 16107",
                "accession": "GCA_003725965.1",
                "taxid": 242230,
                "species_taxid": 242230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0078,
                "matched_fragments": 65,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asanoa ishikariensis",
                "strain": "strain=DSM 44718",
                "accession": "GCA_900107455.1",
                "taxid": 137265,
                "species_taxid": 137265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.281,
                "matched_fragments": 72,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asanoa ishikariensis",
                "strain": "strain=NBRC 14551",
                "accession": "GCA_016862535.1",
                "taxid": 137265,
                "species_taxid": 137265,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.281,
                "matched_fragments": 72,
                "total_fragments": 611,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001950395.1",
                "gtdb_species": "s__EMTCatB1 sp001950395",
                "ani": 84.4927,
                "matched_fragments": 486,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__EMTCatB1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.12",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015351705.1",
                "gtdb_species": "s__JADIIM01 sp015351705",
                "ani": 78.5057,
                "matched_fragments": 219,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__JADIIM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004348925.1",
                "gtdb_species": "s__UBA2286 sp004348925",
                "ani": 78.3741,
                "matched_fragments": 232,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__UBA2286",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002328745.1",
                "gtdb_species": "s__UBA2184 sp002328745",
                "ani": 78.2829,
                "matched_fragments": 220,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__UBA2184",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005774595.1",
                "gtdb_species": "s__D1FN1-002 sp005774595",
                "ani": 78.2201,
                "matched_fragments": 148,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__D1FN1-002;g__D1FN1-002",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002347725.1",
                "gtdb_species": "s__UBA2272 sp002347725",
                "ani": 78.1946,
                "matched_fragments": 204,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__UBA2272",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002841355.1",
                "gtdb_species": "s__UBA2286 sp002841355",
                "ani": 78.1781,
                "matched_fragments": 228,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__UBA2286",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003453535.1",
                "gtdb_species": "s__UBA7930 sp003453535",
                "ani": 78.0155,
                "matched_fragments": 188,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__UBA7930",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.85",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016938395.1",
                "gtdb_species": "s__UBA2272 sp016938395",
                "ani": 77.851,
                "matched_fragments": 191,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__UBA2272",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009773565.1",
                "gtdb_species": "s__WSXY01 sp009773565",
                "ani": 77.8093,
                "matched_fragments": 190,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__WSXY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002423585.1",
                "gtdb_species": "s__UBA6100 sp002423585",
                "ani": 77.7185,
                "matched_fragments": 206,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__UBA2279;g__UBA6100",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014859305.1",
                "gtdb_species": "s__Kmv31 sp014859305",
                "ani": 77.5492,
                "matched_fragments": 178,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__Kmv31;g__Kmv31",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_007121015.1",
                "gtdb_species": "s__SLCP01 sp007121015",
                "ani": 77.4433,
                "matched_fragments": 142,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__SLCP01;g__SLCP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.66",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014859265.1",
                "gtdb_species": "s__SKKZ01 sp014859265",
                "ani": 77.1337,
                "matched_fragments": 156,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__OPB41;f__SLCP01;g__SKKZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107455.1",
                "gtdb_species": "s__Asanoa ishikariensis",
                "ani": 75.288,
                "matched_fragments": 71,
                "total_fragments": 611,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Asanoa",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Parvivirga",
        "hydrogeniphila"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}