{ "type": "genome", "identifier": "GCF_023383595.1", "organism": "Modestobacter marinus", "title": "Modestobacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northumbria University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023383595.1", "bioproject": "PRJNA224116", "biosample": "SAMN04099185", "wgs_master": "LSYR00000000.1", "refseq_category": "na", "taxid": "477641", "species_taxid": "477641", "organism_name": "Modestobacter marinus", "infraspecific_name": "strain=DSM 45201", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/17", "asm_name": "ASM2338359v1", "asm_submitter": "Northumbria University", "gbrs_paired_asm": "GCA_023383595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/383/595/GCF_023383595.1_ASM2338359v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5086805", "genome_size_ungapped": "5086805", "gc_percent": "74.000000", "replicon_count": "0", "scaffold_count": "267", "contig_count": "267", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023383595.1-RS_2024_09_27", "annotation_date": "2024-09-27", "total_gene_count": "4902", "protein_coding_gene_count": "4765", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-17", "dateModified": "2022-05-17", "datePublished": "2022-05-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Modestobacter marinus" ], "sample_taxid": [ "477641" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean" ], "sample_host_location_id": [], "data_size": "1.335 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5086805", "Number of Sequences": "267", "Longest Sequences (bp)": "87926", "N50 (bp)": "30119", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.1", "Number of CDSs": "4682", "Average Protein Length": "311.9", "Coding Ratio (%)": "86.1", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Modestobacter marinus", "strain": "strain=DSM 45201", "accession": "GCA_023383595.1", "taxid": 477641, "species_taxid": 477641, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1548, "total_fragments": 1565, "ani_threshold": 95, 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"Modestobacter versicolor", "strain": "strain=DSM 16678", "accession": "GCA_014195485.1", "taxid": 429133, "species_taxid": 429133, "relation_to_type": "type", "validated": true, "ani": 86.0715, "matched_fragments": 1051, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter excelsi", "strain": "strain=1G6", "accession": "GCA_005930495.1", "taxid": 2213161, "species_taxid": 2213161, "relation_to_type": "type", "validated": true, "ani": 85.3114, "matched_fragments": 975, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter altitudinis", "strain": "strain=1G4", "accession": "GCA_005930475.1", "taxid": 2213158, "species_taxid": 2213158, "relation_to_type": "type", "validated": true, "ani": 85.2405, "matched_fragments": 1031, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Modestobacter muralis", "strain": "strain=DSM 100205", "accession": "GCA_010682105.1", "taxid": 1608614, "species_taxid": 1608614, "relation_to_type": "type", "validated": true, "ani": 84.5543, "matched_fragments": 959, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_011758655.1", "gtdb_species": "s__Modestobacter marinus", "ani": 99.9001, "matched_fragments": 1543, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000761485.1", "gtdb_species": "s__Modestobacter caceresii", "ani": 91.6937, "matched_fragments": 1179, "total_fragments": 1565, 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013408865.1", "gtdb_species": "s__Modestobacter sp013408865", "ani": 83.5827, "matched_fragments": 947, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Modestobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.063, "cell_length": 0.15, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 24.5, "optimum_ph": 7.5, "genome_size": 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