{ "type": "genome", "identifier": "GCF_023472875.1", "organism": "Neisseria perflava", "title": "Neisseria perflava", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Gothenburg - CCUG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023472875.1", "bioproject": "PRJNA224116", "biosample": "SAMN28187201", "wgs_master": "JAMDHR000000000.1", "refseq_category": "na", "taxid": "33053", "species_taxid": "33053", "organism_name": "Neisseria perflava", "infraspecific_name": "strain=CCUG 17915", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/18", "asm_name": "ASM2347287v1", "asm_submitter": "University of Gothenburg - CCUG", "gbrs_paired_asm": "GCA_023472875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/472/875/GCF_023472875.1_ASM2347287v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2265569", "genome_size_ungapped": "2265569", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "85", "contig_count": "85", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023472875.1-RS_2024_05_25", "annotation_date": "2024-05-25", "total_gene_count": "2231", "protein_coding_gene_count": "2108", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-18", "dateModified": "2022-05-18", "datePublished": "2022-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria perflava" ], "sample_taxid": [ "33053" ], "sample_host_organism": [ "Missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "Missing" ], "sample_host_disease_id": [], "sample_host_location": [ "Missing" ], "sample_host_location_id": [], "data_size": "0.643 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2265569", "Number of Sequences": "85", "Longest Sequences (bp)": "183381", "N50 (bp)": "52486", "Gap Ratio (%)": "0.001015", "GCcontent (%)": "49.1", "Number of CDSs": "2147", "Average Protein Length": "300.9", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 710, "total_fragments": 714, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria subflava", "strain": "strain=ATCC 49275", "accession": "GCA_005221305.1", "taxid": 28449, "species_taxid": 28449, "relation_to_type": "type", "validated": true, "ani": 94.6466, "matched_fragments": 612, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria flavescens", "strain": "strain=ATCC 13120", "accession": "GCA_005221285.1", "taxid": 484, "species_taxid": 484, "relation_to_type": "type", "validated": true, "ani": 94.1605, "matched_fragments": 599, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria flavescens", "strain": "strain=NCTC8263", "accession": "GCA_900453805.1", "taxid": 484, "species_taxid": 484, "relation_to_type": "type", "validated": true, "ani": 94.1147, "matched_fragments": 601, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=ATCC 14685", "accession": "GCA_000173895.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 85.4329, "matched_fragments": 359, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=FDAARGOS_871", "accession": "GCA_016028715.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 85.2301, "matched_fragments": 366, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=NCTC10294", "accession": "GCA_900475315.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 85.1934, "matched_fragments": 368, "total_fragments": 714, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=CCUG 2156", "accession": "GCA_021025975.1", "taxid": 483, 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