{ "type": "genome", "identifier": "GCF_023498005.1", "organism": "Streptomyces durmitorensis", "title": "Streptomyces durmitorensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Hunan Institute of Agricultural Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023498005.1", "bioproject": "PRJNA224116", "biosample": "SAMN28167653", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "319947", "species_taxid": "319947", "organism_name": "Streptomyces durmitorensis", "infraspecific_name": "strain=MS405", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/18", "asm_name": "ASM2349800v1", "asm_submitter": "Hunan Institute of Agricultural Biotechnology", "gbrs_paired_asm": "GCA_023498005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/498/005/GCF_023498005.1_ASM2349800v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9862620", "genome_size_ungapped": "9862620", "gc_percent": "70.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023498005.1-RS_2024_05_25", "annotation_date": "2024-05-25", "total_gene_count": "8703", "protein_coding_gene_count": "8449", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-18", "dateModified": "2022-05-18", "datePublished": "2022-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces durmitorensis" ], "sample_taxid": [ "319947" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Fujian" ], "sample_host_location_id": [], "data_size": "2.653 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 7.29, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9862620", "Number of Sequences": "2", "Longest Sequences (bp)": "9715409", "N50 (bp)": "9715409", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "8835", "Average Protein Length": "332.7", "Coding Ratio (%)": "89.4", "Number of rRNAs": "18", "Number of tRNAs": "76", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces durmitorensis", "strain": "strain=MS405", "accession": "GCA_023498005.1", "taxid": 319947, "species_taxid": 319947, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3287, "total_fragments": 3287, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces longisporoflavus", "strain": "strain=JCM 4396", "accession": "GCA_014649775.1", "taxid": 28044, "species_taxid": 28044, "relation_to_type": "type", "validated": true, "ani": 90.6471, "matched_fragments": 2432, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alboniger", "strain": "strain=NRRL B-1832", "accession": "GCA_001418385.1", "taxid": 132473, "species_taxid": 132473, "relation_to_type": "type", "validated": true, "ani": 86.0517, "matched_fragments": 1576, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kanamyceticus", "strain": "strain=ATCC 12853", "accession": "GCA_008704495.1", "taxid": 1967, "species_taxid": 1967, "relation_to_type": "type", "validated": true, "ani": 86.0201, "matched_fragments": 2188, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces silaceus", "strain": "strain=NRRL B-24166", "accession": "GCA_001419745.1", "taxid": 545123, "species_taxid": 545123, "relation_to_type": "type", "validated": true, "ani": 86.0015, "matched_fragments": 1827, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alboniger", "strain": "strain=ATCC 12461", "accession": "GCA_008704395.1", "taxid": 132473, "species_taxid": 132473, "relation_to_type": "type", "validated": true, "ani": 85.9542, "matched_fragments": 1902, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kanamyceticus", "strain": "strain=NRRL B-2535", "accession": "GCA_001418465.1", "taxid": 1967, "species_taxid": 1967, "relation_to_type": "type", "validated": true, "ani": 85.9431, "matched_fragments": 1889, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alfalfae", "strain": "strain=XY25", "accession": "GCA_004127445.1", "taxid": 1642299, "species_taxid": 1642299, "relation_to_type": "type", "validated": true, "ani": 85.2976, "matched_fragments": 1855, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alfalfae", "strain": "strain=XY25", "accession": "GCA_004212445.1", "taxid": 1642299, "species_taxid": 1642299, "relation_to_type": "type", "validated": true, "ani": 85.2967, "matched_fragments": 1794, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces aureoverticillatus", "strain": "strain=JCM 4347", "accession": "GCA_014649395.1", "taxid": 66871, "species_taxid": 66871, "relation_to_type": "type", "validated": true, "ani": 84.5513, "matched_fragments": 2022, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lasiicapitis", "strain": "strain=CGMCC 4.7349", "accession": "GCA_014646335.1", "taxid": 1923961, "species_taxid": 1923961, "relation_to_type": "type", "validated": true, "ani": 84.4064, "matched_fragments": 2032, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces flavofungini", "strain": "strain=JCM 4753", "accession": "GCA_016411765.1", "taxid": 68200, "species_taxid": 68200, "relation_to_type": "type", "validated": true, "ani": 84.3076, "matched_fragments": 2029, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spectabilis", "strain": "strain=KCTC9218", "accession": "GCA_022698305.1", "taxid": 68270, "species_taxid": 68270, "relation_to_type": "type", "validated": true, "ani": 83.9647, "matched_fragments": 1992, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albidochromogenes", "strain": "strain=DSM 41800", "accession": "GCA_005981925.1", "taxid": 329524, "species_taxid": 329524, "relation_to_type": "type", "validated": true, "ani": 82.5443, "matched_fragments": 1262, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces aurantiacus", "strain": "strain=NRRL ISP-5412", "accession": "GCA_001418335.1", "taxid": 47760, "species_taxid": 47760, "relation_to_type": "type", "validated": true, "ani": 82.4898, "matched_fragments": 1483, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violascens", "strain": "strain=NBRC 12920", "accession": "GCA_020521295.1", "taxid": 67381, "species_taxid": 67381, "relation_to_type": "type", "validated": true, "ani": 82.1631, "matched_fragments": 1568, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces violascens", "strain": "strain=JCM 4424", "accession": "GCA_014649955.1", "taxid": 67381, "species_taxid": 67381, "relation_to_type": "type", "validated": true, "ani": 82.0701, "matched_fragments": 1544, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces justiciae", "strain": "strain=3R004", "accession": "GCA_015163075.1", "taxid": 2780140, "species_taxid": 2780140, "relation_to_type": "type", "validated": true, "ani": 82.0149, "matched_fragments": 1780, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces neyagawaensis", "strain": "strain=JCM 4796", "accession": "GCA_023516595.1", "taxid": 42238, "species_taxid": 42238, "relation_to_type": "type", "validated": true, "ani": 81.7997, "matched_fragments": 1568, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces zagrosensis", "strain": "strain=CECT 8305", "accession": "GCA_014203645.1", "taxid": 1042984, "species_taxid": 1042984, "relation_to_type": "type", "validated": true, "ani": 79.5693, "matched_fragments": 1095, "total_fragments": 3287, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 7.29, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCF_009769735.1", "gtdb_species": "s__Streptomyces sp009769735", "ani": 91.9956, "matched_fragments": 2541, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014649775.1", "gtdb_species": "s__Streptomyces longisporoflavus", "ani": 90.6602, "matched_fragments": 2430, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004684775.1", "gtdb_species": "s__Streptomyces sp004684775", "ani": 89.3148, "matched_fragments": 1980, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003945545.1", "gtdb_species": "s__Streptomyces sp003945545", "ani": 86.0724, "matched_fragments": 1944, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008704495.1", "gtdb_species": "s__Streptomyces kanamyceticus", "ani": 86.0328, "matched_fragments": 2182, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002556545.1", "gtdb_species": "s__Streptomyces formicae", "ani": 86.0067, "matched_fragments": 2174, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008704395.1", "gtdb_species": "s__Streptomyces alboniger", "ani": 85.9482, "matched_fragments": 1899, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.40", "min_intra_species_ani": "96.83", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004127445.1", "gtdb_species": "s__Streptomyces alfalfae", "ani": 85.2366, "matched_fragments": 1868, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_014649395.1", "gtdb_species": "s__Streptomyces aureoverticillatus", "ani": 84.5678, "matched_fragments": 2019, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646335.1", "gtdb_species": "s__Streptomyces lasiicapitis", "ani": 84.4092, "matched_fragments": 2030, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008905045.1", "gtdb_species": "s__Streptomyces albicerus", "ani": 82.8007, "matched_fragments": 1862, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011045015.1", "gtdb_species": "s__Streptomyces scabichelini", "ani": 82.5056, "matched_fragments": 1672, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003719395.1", "gtdb_species": "s__Streptomyces altiplanensis", "ani": 82.4093, "matched_fragments": 1399, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.26", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018614055.1", "gtdb_species": "s__Streptomyces sp018614055", "ani": 82.2001, "matched_fragments": 1491, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646115.1", "gtdb_species": "s__Streptomyces camponoticapitis", "ani": 81.0614, "matched_fragments": 1399, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203645.1", "gtdb_species": "s__Streptomyces zagrosensis", "ani": 79.5813, "matched_fragments": 1093, "total_fragments": 3287, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.208, "coccus_cell_shape": 0.032, "filament_cell_shape": 0.582, "coccobacillus_cell_shape": 0.098, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.076 }, "_genome_taxon": [ "Streptomyces", "durmitorensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }