{ "type": "genome", "identifier": "GCF_023520795.1", "organism": "Corynebacterium accolens", "title": "Corynebacterium accolens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023520795.1", "bioproject": "PRJNA224116", "biosample": "SAMN13404507", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "38284", "species_taxid": "38284", "organism_name": "Corynebacterium accolens", "infraspecific_name": "strain=DSM 44278", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/23", "asm_name": "ASM2352079v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_023520795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/520/795/GCF_023520795.1_ASM2352079v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2465625", "genome_size_ungapped": "2465625", "gc_percent": "59.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023520795.1-RS_2024_05_27", "annotation_date": "2024-05-27", "total_gene_count": "2327", "protein_coding_gene_count": "2208", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-23", "dateModified": "2022-05-23", "datePublished": "2022-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium accolens" ], "sample_taxid": [ "38284" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic: Havlickuv, Brod" ], "sample_host_location_id": [], "data_size": "0.694 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2465625", "Number of Sequences": "1", "Longest Sequences (bp)": "2465625", "N50 (bp)": "2465625", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "2345", "Average Protein Length": "311.6", "Coding Ratio (%)": "88.9", "Number of rRNAs": "12", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium accolens", "strain": "strain=DSM 44278", "accession": "GCA_023520795.1", "taxid": 38284, "species_taxid": 38284, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 820, "total_fragments": 821, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium accolens", "strain": "strain=ATCC 49725", "accession": "GCA_000159115.1", "taxid": 38284, "species_taxid": 38284, "relation_to_type": "type", "validated": true, "ani": 99.9594, "matched_fragments": 796, "total_fragments": 821, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium macginleyi", "strain": "strain=FDAARGOS_1195", "accession": "GCA_016889465.1", "taxid": 38290, "species_taxid": 38290, "relation_to_type": "type", "validated": true, "ani": 88.0938, "matched_fragments": 683, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium macginleyi", "strain": "strain=CCUG 32361", "accession": "GCA_003688935.1", "taxid": 38290, "species_taxid": 38290, "relation_to_type": "type", "validated": true, "ani": 88.0024, "matched_fragments": 672, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tuberculostearicum", "strain": "strain=FDAARGOS_1117", "accession": "GCA_016728365.1", "taxid": 38304, "species_taxid": 38304, "relation_to_type": "type", "validated": true, "ani": 82.1115, "matched_fragments": 535, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium camporealensis", "strain": "strain=DSM 44610", "accession": "GCA_000980815.1", "taxid": 161896, "species_taxid": 161896, "relation_to_type": "type", "validated": true, "ani": 79.6325, "matched_fragments": 310, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium flavescens", "strain": "strain=OJ8", "accession": "GCA_001941465.1", "taxid": 28028, "species_taxid": 28028, "relation_to_type": "type", "validated": true, "ani": 79.1151, "matched_fragments": 265, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium massiliense", "strain": "strain=DSM 45435", "accession": "GCA_000420605.1", "taxid": 441501, "species_taxid": 441501, "relation_to_type": "type", "validated": true, "ani": 78.8637, "matched_fragments": 252, "total_fragments": 821, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000159115.1", "gtdb_species": "s__Corynebacterium accolens", "ani": 99.9594, "matched_fragments": 796, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.20", "min_intra_species_ani": "96.99", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_000478175.1", "gtdb_species": "s__Corynebacterium sp000478175", "ani": 93.7239, "matched_fragments": 728, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003688935.1", "gtdb_species": "s__Corynebacterium macginleyi", "ani": 87.9905, "matched_fragments": 673, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 26, "status": "-" }, { "accession": "GCF_013408445.1", "gtdb_species": "s__Corynebacterium tuberculostearicum", "ani": 82.0511, "matched_fragments": 550, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 96.3332, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "96.59", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016894265.1", "gtdb_species": "s__Corynebacterium tuberculostearicum_D", "ani": 82.0379, "matched_fragments": 531, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.1108, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900539985.1", "gtdb_species": "s__Corynebacterium sp900539985", "ani": 81.9177, "matched_fragments": 477, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000175635.1", "gtdb_species": "s__Corynebacterium tuberculostearicum_C", "ani": 81.7139, "matched_fragments": 541, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 96.3332, "mean_intra_species_ani": "96.71", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002154655.1", "gtdb_species": "s__Corynebacterium kefirresidentii", "ani": 81.2429, "matched_fragments": 497, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.23", "min_intra_species_ani": "95.39", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_000980815.1", "gtdb_species": "s__Corynebacterium camporealensis", "ani": 79.6032, "matched_fragments": 308, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008693105.1", "gtdb_species": "s__Corynebacterium flavescens", "ani": 78.8012, "matched_fragments": 254, "total_fragments": 821, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "98.96", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 6, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.0, "doubling_h": -0.089, "growth_tmp": 37.0, "optimum_tmp": 35.173, "optimum_ph": 7.292, "genome_size": 2390899.5, "gc_content": 59.7, "coding_genes": 2390.094, "rRNA16S_genes": 4.282, "tRNA_genes": 52.979, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.75, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Corynebacterium", "accolens" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }