{ "type": "genome", "identifier": "GCF_023522835.1", "organism": "Oceanobacillus saliphilus", "title": "Oceanobacillus saliphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sun Yat-sen University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023522835.1", "bioproject": "PRJNA224116", "biosample": "SAMN26570631", "wgs_master": "JALCZU000000000.1", "refseq_category": "reference genome", "taxid": "2925834", "species_taxid": "2925834", "organism_name": "Oceanobacillus saliphilus", "infraspecific_name": "strain=APA_H-1(4)", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/23", "asm_name": "ASM2352283v1", "asm_submitter": "Sun Yat-sen University", "gbrs_paired_asm": "GCA_023522835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/522/835/GCF_023522835.1_ASM2352283v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4227370", "genome_size_ungapped": "4226870", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "283", "contig_count": "283", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023522835.1-RS_2024_08_02", "annotation_date": "2024-08-02", "total_gene_count": "4244", "protein_coding_gene_count": "4049", "non_coding_gene_count": "112", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-23", "dateModified": "2022-05-23", "datePublished": "2022-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacillus saliphilus" ], "sample_taxid": [ "2925834" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Heilongjiang Province" ], "sample_host_location_id": [], "data_size": "1.206 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4227370", "Number of Sequences": "283", "Longest Sequences (bp)": "712128", "N50 (bp)": "262141", "Gap Ratio (%)": "0.011828", "GCcontent (%)": "38.6", "Number of CDSs": "4019", "Average Protein Length": "284.0", "Coding Ratio (%)": "81.0", "Number of rRNAs": "6", "Number of tRNAs": "86", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacillus damuensis", "strain": "strain=PT-20", "accession": "GCA_001618145.1", "taxid": 937928, "species_taxid": 937928, "relation_to_type": "type", "validated": true, "ani": 82.7804, "matched_fragments": 779, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus rekensis", "strain": "strain=PT-11", "accession": "GCA_002153375.1", "taxid": 937927, "species_taxid": 937927, "relation_to_type": "type", "validated": true, "ani": 79.8357, "matched_fragments": 529, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus massiliensis", "strain": "strain=Ndiop", "accession": "GCA_000285495.1", "taxid": 1465765, "species_taxid": 1465765, "relation_to_type": "type", "validated": true, "ani": 79.0589, "matched_fragments": 404, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus polygoni", "strain": "strain=SA9", "accession": "GCA_008304605.1", "taxid": 1235259, "species_taxid": 1235259, "relation_to_type": "type", "validated": true, "ani": 78.7622, "matched_fragments": 326, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus profundus", "strain": "strain=DSM 18246", "accession": "GCA_003515705.1", "taxid": 372463, "species_taxid": 372463, "relation_to_type": "type", "validated": true, "ani": 78.4377, "matched_fragments": 337, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus profundus", "strain": "strain=CL-MP28", "accession": "GCA_008087205.1", "taxid": 372463, "species_taxid": 372463, "relation_to_type": "type", "validated": true, "ani": 78.393, "matched_fragments": 341, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus zhaokaii", "strain": "strain=160", "accession": "GCA_003352005.1", "taxid": 2052660, "species_taxid": 2052660, "relation_to_type": "type", "validated": true, "ani": 77.6508, "matched_fragments": 231, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus arenosus", "strain": "strain=CAU 1183", "accession": "GCA_003369575.1", "taxid": 1229153, "species_taxid": 1229153, "relation_to_type": "type", "validated": true, "ani": 77.6351, "matched_fragments": 218, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus indicus", "strain": "strain=P2-C2", "accession": "GCA_002266285.1", "taxid": 2024554, "species_taxid": 2024554, "relation_to_type": "type", "validated": true, "ani": 77.5836, "matched_fragments": 192, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus profundi", "strain": "strain=P3-H5", "accession": "GCA_002287375.1", "taxid": 2024555, "species_taxid": 2024555, "relation_to_type": "type", "validated": true, "ani": 77.3858, "matched_fragments": 219, "total_fragments": 1371, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus bengalensis", "strain": 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"spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Oceanobacillus", "saliphilus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }