{ "type": "genome", "identifier": "GCF_023546765.1", "organism": "Methylobacterium tardum", "title": "Methylobacterium tardum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Changwon National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023546765.1", "bioproject": "PRJNA224116", "biosample": "SAMN28180284", "wgs_master": "na", "refseq_category": "na", "taxid": "374432", "species_taxid": "374432", "organism_name": "Methylobacterium tardum", "infraspecific_name": "strain=DSM 19566", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/25", "asm_name": "ASM2354676v1", "asm_submitter": "Changwon National University", "gbrs_paired_asm": "GCA_023546765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/546/765/GCF_023546765.1_ASM2354676v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6941561", "genome_size_ungapped": "6941561", "gc_percent": "69.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023546765.1-RS_2024_05_29", "annotation_date": "2024-05-29", "total_gene_count": "6701", "protein_coding_gene_count": "6104", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-25", "dateModified": "2022-05-25", "datePublished": "2022-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium tardum" ], "sample_taxid": [ "374432" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.885 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6941561", "Number of Sequences": "2", "Longest Sequences (bp)": "6894209", "N50 (bp)": "6894209", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "6933", "Average Protein Length": "279.4", "Coding Ratio (%)": "83.7", "Number of rRNAs": "15", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium tardum", "strain": "strain=DSM 19566", "accession": "GCA_023546765.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2312, "total_fragments": 2313, "ani_threshold": 95, 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"organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_001936175.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 87.941, "matched_fragments": 1491, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_900113465.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 87.8782, "matched_fragments": 1454, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 87.1118, "matched_fragments": 1483, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllostachyos", "strain": "strain=BL47", "accession": "GCA_900103445.1", "taxid": 582672, "species_taxid": 582672, "relation_to_type": "type", "validated": true, "ani": 86.8306, "matched_fragments": 1475, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium mesophilicum", "strain": "strain=NBRC 15688", "accession": "GCA_022179445.1", "taxid": 39956, "species_taxid": 39956, "relation_to_type": "type", "validated": true, "ani": 85.7691, "matched_fragments": 1372, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aerolatum", "strain": "strain=DSM 19013", "accession": "GCA_022179085.1", "taxid": 418708, "species_taxid": 418708, "relation_to_type": "type", "validated": true, "ani": 82.5496, "matched_fragments": 1062, "total_fragments": 2313, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 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"num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.23, "cell_length": 0.55, "doubling_h": 0.623, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": 6.721, "genome_size": 6004081.51, "gc_content": 68.2, "coding_genes": 6044.758, "rRNA16S_genes": 6.142, "tRNA_genes": 64.375, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Methylobacterium", "tardum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }