{ "type": "genome", "identifier": "GCF_023554635.1", "organism": "Nocardioides bruguierae", "title": "Nocardioides bruguierae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Life sciences Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_023554635.1", "bioproject": "PRJNA224116", "biosample": "SAMN28546152", "wgs_master": "JAMJPH000000000.1", "refseq_category": "reference genome", "taxid": "2945102", "species_taxid": "2945102", "organism_name": "Nocardioides bruguierae", "infraspecific_name": "strain=BSK12Z-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/05/25", "asm_name": "ASM2355463v1", "asm_submitter": "Life sciences Institute", "gbrs_paired_asm": "GCA_023554635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/554/635/GCF_023554635.1_ASM2355463v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4387942", "genome_size_ungapped": "4387942", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_023554635.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "4070", "protein_coding_gene_count": "3992", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-05-25", "dateModified": "2022-05-25", "datePublished": "2022-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioides bruguierae" ], "sample_taxid": [ "2945102" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangxi" ], "sample_host_location_id": [], "data_size": "1.152 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4387942", "Number of Sequences": "48", "Longest Sequences (bp)": "457519", "N50 (bp)": "194154", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.5", "Number of CDSs": "4049", "Average Protein Length": "327.7", "Coding Ratio (%)": "90.7", "Number of rRNAs": "5", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides salarius", "strain": "strain=DSM 18239", "accession": "GCA_015070765.1", "taxid": 374513, "species_taxid": 374513, "relation_to_type": "type", "validated": true, "ani": 81.3327, "matched_fragments": 785, "total_fragments": 1435, "ani_threshold": 95, 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"Nocardioides marinus", "strain": "strain=DSM 18248", "accession": "GCA_013408145.1", "taxid": 374514, "species_taxid": 374514, "relation_to_type": "type", "validated": true, "ani": 81.2667, "matched_fragments": 759, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides marinisabuli", "strain": "strain=DSM 18965", "accession": "GCA_013466785.1", "taxid": 419476, "species_taxid": 419476, "relation_to_type": "type", "validated": true, "ani": 81.1066, "matched_fragments": 803, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 80.7195, "matched_fragments": 766, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 80.585, "matched_fragments": 688, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 80.5699, "matched_fragments": 682, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 80.4652, "matched_fragments": 675, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 80.1656, "matched_fragments": 667, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 80.03, "matched_fragments": 669, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides litoris", "strain": "strain=DSM 103718", "accession": "GCA_006346315.1", "taxid": 1926648, "species_taxid": 1926648, "relation_to_type": "type", "validated": true, "ani": 80.0192, "matched_fragments": 720, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 79.9886, "matched_fragments": 738, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 79.9859, "matched_fragments": 712, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 79.8443, "matched_fragments": 632, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sediminis", "strain": "strain=KCTC 19271", "accession": "GCA_003047295.1", "taxid": 433648, "species_taxid": 433648, "relation_to_type": "type", "validated": true, "ani": 79.7878, "matched_fragments": 634, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 79.7826, "matched_fragments": 678, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cavernae", "strain": "strain=KCTC 39551", "accession": "GCA_014779675.1", "taxid": 1921566, "species_taxid": 1921566, "relation_to_type": "type", "validated": true, "ani": 79.7124, "matched_fragments": 615, "total_fragments": 1435, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides anomalus", "strain": "strain=HKS04", "accession": "GCA_011046535.1", "taxid": 2712223, "species_taxid": 2712223, "relation_to_type": "type", "validated": true, "ani": 79.6325, "matched_fragments": 728, 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