{
    "type": "genome",
    "identifier": "GCF_023555375.1",
    "organism": "Guyparkeria hydrothermalis",
    "title": "Guyparkeria hydrothermalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_023555375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN23673797",
        "wgs_master": "JAJSEE000000000.1",
        "refseq_category": "reference genome",
        "taxid": "923",
        "species_taxid": "923",
        "organism_name": "Guyparkeria hydrothermalis",
        "infraspecific_name": "strain=R3",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/05/25",
        "asm_name": "ASM2355537v1",
        "asm_submitter": "Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_023555375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/023/555/375/GCF_023555375.1_ASM2355537v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2433989",
        "genome_size_ungapped": "2433989",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "9",
        "contig_count": "9",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_023555375.1-RS_2024_05_29",
        "annotation_date": "2024-05-29",
        "total_gene_count": "2198",
        "protein_coding_gene_count": "2139",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-05-25",
    "dateModified": "2022-05-25",
    "datePublished": "2022-05-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Guyparkeria hydrothermalis"
        ],
        "sample_taxid": [
            "923"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: North Fiji Basin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.667 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2433989",
        "Number of Sequences": "9",
        "Longest Sequences (bp)": "587972",
        "N50 (bp)": "303974",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.5",
        "Number of CDSs": "2162",
        "Average Protein Length": "334.4",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Guyparkeria hydrothermalis",
                "strain": "strain=R3",
                "accession": "GCA_023555375.1",
                "taxid": 923,
                "species_taxid": 923,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 806,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thioalkalivibrio thiocyanoxidans",
                "strain": "strain=ARh2",
                "accession": "GCA_000385215.1",
                "taxid": 152475,
                "species_taxid": 152475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8809,
                "matched_fragments": 152,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio versutus",
                "strain": "strain=AL 2",
                "accession": "GCA_001999325.1",
                "taxid": 106634,
                "species_taxid": 106634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8588,
                "matched_fragments": 139,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio sulfidiphilus",
                "strain": "strain=HL-EbGR7",
                "accession": "GCA_000021985.1",
                "taxid": 1033854,
                "species_taxid": 1033854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5602,
                "matched_fragments": 174,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thiohalobacter thiocyanaticus",
                "strain": "strain=Hrh1",
                "accession": "GCA_003932505.1",
                "taxid": 585455,
                "species_taxid": 585455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5119,
                "matched_fragments": 172,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas oryzae",
                "strain": "strain=KCTC 32247",
                "accession": "GCA_900104805.1",
                "taxid": 1392877,
                "species_taxid": 1392877,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3868,
                "matched_fragments": 189,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aromaticivorans",
                "strain": "strain=MAP12",
                "accession": "GCA_019097855.1",
                "taxid": 2849492,
                "species_taxid": 2849492,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.293,
                "matched_fragments": 160,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2032,
                "matched_fragments": 177,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arenimonas donghaensis",
                "strain": "strain=HO3-R19",
                "accession": "GCA_000743535.1",
                "taxid": 375061,
                "species_taxid": 375061,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1974,
                "matched_fragments": 122,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter solisilvae",
                "strain": "strain=R19",
                "accession": "GCA_016613535.2",
                "taxid": 2763317,
                "species_taxid": 2763317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1306,
                "matched_fragments": 128,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oleiagrimonas soli",
                "strain": "strain=3.5X",
                "accession": "GCA_000761445.1",
                "taxid": 1543381,
                "species_taxid": 1543381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0471,
                "matched_fragments": 120,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalbus denitrificans",
                "strain": "strain=DSM 26407",
                "accession": "GCA_003337735.1",
                "taxid": 547122,
                "species_taxid": 547122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9629,
                "matched_fragments": 154,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter aestuarii",
                "strain": "strain=JCM 31130",
                "accession": "GCA_006546775.1",
                "taxid": 1706195,
                "species_taxid": 1706195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9167,
                "matched_fragments": 135,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysobacter spongiae",
                "strain": "strain=119BY6-57",
                "accession": "GCA_014145325.1",
                "taxid": 2025720,
                "species_taxid": 2025720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8987,
                "matched_fragments": 137,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Vulcaniibacterium thermophilum",
                "strain": "strain=KCTC 32020",
                "accession": "GCA_014656335.1",
                "taxid": 1169913,
                "species_taxid": 1169913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8665,
                "matched_fragments": 139,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinisphaera orenii",
                "strain": "strain=MK-B5",
                "accession": "GCA_003788635.1",
                "taxid": 856731,
                "species_taxid": 856731,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.771,
                "matched_fragments": 127,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stenotrophomonas acidaminiphila",
                "strain": "strain=DSM 13117",
                "accession": "GCA_024221815.1",
                "taxid": 128780,
                "species_taxid": 128780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7594,
                "matched_fragments": 133,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas indica",
                "strain": "strain=PPL560",
                "accession": "GCA_022669045.1",
                "taxid": 2912242,
                "species_taxid": 2912242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7203,
                "matched_fragments": 160,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas campisalis",
                "strain": "strain=A4",
                "accession": "GCA_022341425.1",
                "taxid": 74661,
                "species_taxid": 74661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7068,
                "matched_fragments": 156,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas sessilinigenes",
                "strain": "strain=CMR12a",
                "accession": "GCA_019139855.1",
                "taxid": 658629,
                "species_taxid": 658629,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6695,
                "matched_fragments": 89,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Plasticicumulans lactativorans",
                "strain": "strain=DSM 25287",
                "accession": "GCA_004341245.1",
                "taxid": 1133106,
                "species_taxid": 1133106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6244,
                "matched_fragments": 210,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas aeruginosa",
                "strain": "strain=DSM 50071",
                "accession": "GCA_024169805.1",
                "taxid": 287,
                "species_taxid": 287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6213,
                "matched_fragments": 165,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salinisphaera halophila",
                "strain": "strain=YIM 95161",
                "accession": "GCA_003732545.1",
                "taxid": 1304158,
                "species_taxid": 1304158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5671,
                "matched_fragments": 131,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas muyukensis",
                "strain": "strain=COW39",
                "accession": "GCA_019139535.1",
                "taxid": 2842357,
                "species_taxid": 2842357,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5063,
                "matched_fragments": 149,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia mimosarum",
                "strain": "strain=LMG 23256",
                "accession": "GCA_902833725.1",
                "taxid": 312026,
                "species_taxid": 312026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0347,
                "matched_fragments": 106,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia mimosarum",
                "strain": "strain=NBRC 106338",
                "accession": "GCA_000739815.1",
                "taxid": 312026,
                "species_taxid": 312026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8499,
                "matched_fragments": 103,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia mimosarum",
                "strain": "strain=LMG 23256",
                "accession": "GCA_000472825.1",
                "taxid": 312026,
                "species_taxid": 312026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7668,
                "matched_fragments": 99,
                "total_fragments": 807,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009734265.1",
                "gtdb_species": "s__Guyparkeria halophila",
                "ani": 97.5502,
                "matched_fragments": 759,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Halothiobacillales;f__Halothiobacillaceae;g__Guyparkeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.42",
                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003932495.1",
                "gtdb_species": "s__Guyparkeria sp003932495",
                "ani": 88.7493,
                "matched_fragments": 663,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Halothiobacillales;f__Halothiobacillaceae;g__Guyparkeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016278265.1",
                "gtdb_species": "s__Guyparkeria sp016278265",
                "ani": 87.1061,
                "matched_fragments": 677,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Halothiobacillales;f__Halothiobacillaceae;g__Guyparkeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001641825.1",
                "gtdb_species": "s__Guyparkeria sp001641825",
                "ani": 85.663,
                "matched_fragments": 627,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Halothiobacillales;f__Halothiobacillaceae;g__Guyparkeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016938615.1",
                "gtdb_species": "s__Guyparkeria sp016938615",
                "ani": 85.0779,
                "matched_fragments": 529,
                "total_fragments": 807,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Halothiobacillales;f__Halothiobacillaceae;g__Guyparkeria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": 0.053,
        "growth_tmp": 35.5,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Guyparkeria",
        "hydrothermalis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}